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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCAGCATCGCTGGCAGTTGCAATCATGAAGAAGAAAGCCGGTGCTCGGATTTTCTTGGGTTGTGACAACCATCCTTTGTCAAGgtaatgctgctttcgttctaactttgagattactttctaacttttgatgagacatcaaatgtttgacccctcactcttctcag

Basic information

species Arabidopsis thaliana
transcript AT2G39080.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39080.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G09370.1 (Glycine max), 5'ss of exon 6
GATGCAGCATCGCTGGCAGTTGCAATCATGAAGAAGAAAGCCGGTGCTCGGATTTTCTTGGGTTGTGACAACCATCCTTTGTCAAGgtaatgctgctttcgttctaactt-tgagattactttctaacttttgatgagacatcaaatgtttgacccctcactcttctcag-------------------------------------------------------------------------
|||||||| || ||  ||||||||||| ||||||| |||  | |||  | |||||||||||||||||| || ||||||||||| ||||   | |||||||  | |||||| | |  | || |||| | | ||  ||    ||            |  |||   |  |  |                                                                         
GATGCAGCTTCCCTCTCAGTTGCAATCTTGAAGAAAAAATTCCGTGGGCAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAGgttggg-tgctttctctttaacttgtcaagtaacattctgattattcttgcaggatatttctaccagtctatcagattgttgtgattatatatatatatatattcactttttggttaaaagaacaatctcacatccacaccgctgctgtgttttcag

upper sequence: AT2G39080.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G26450.1 (Glycine max), 5'ss of exon 6
GATGCAGCATCGCTGGCAGTTGCAATCATGAAGAAGAAAGCCGGTGCTCGGATTTTCTTGGGTTGTGACAACCATCCTTTGTCAAGgtaatgctgctttcgttctaactt-tgagattactttctaac-ttttgatgagacat------caaatgtttgacccctcactcttctcag------------------------------------------------------------
|||||||| || ||  ||||||||||| ||||||| ||   | |||  | |||||||||||||||||| || ||||||||||| ||||   |||||||||  | |||||| | | |||| | |  |   || |     ||  |      ||     |    |  |||   || |                                                               
GATGCAGCTTCCCTCTCAGTTGCAATCTTGAAGAAAAACTTCCGTGGACAGATTTTCTTGGGTTGTGATAATCATCCTTTGTCTAGgttg-gctgctttctctttaacttgtcaaattattcttgattattcttgcaggatgtttctgccagtcaatcagactgtcatgatttttttttctttcactttttggttaaaagaaacattctcacactcacactgctgatgtgttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164213733|gb|ES166097.1|ES166097
EST:     AAAGCCGGTGCTCGGATTTTCTTGGGTTGTGACAACCATCCTTTGTCAAG                         GCAAGAGGTGATGGACCTGATGGCTCAA
genomic: AAAGCCGGTGCTCGGATTTTCTTGGGTTGTGACAACCATCCTTTGTCAAGgtaatgctgc ... ctcttctcagGCAAGAGGTGATGGACCTGATGGCTCAA