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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTTAAAGTGAAGCCAGAGGAAGTGTTAATTGAGTCAACTGGTGTTATCGGTCAGAGAATAAAAAAGgtataacttatttctttctcatttttcctccatgcaagtgcttgacaaagttagtttactcgtgaatctttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G37500.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37500.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g17120.2 (Oryza sativa), 5'ss of exon 6
CTACTTAAAGTGAAGCCAGAGGAAGTGTTAATTGAGTCAACTGGTGTTATCGGTCAGAGAATAAAAAAGgtataac-ttatttctttctcatttttcctccatgcaagtgcttgacaaagttagtttactcgtgaatctttgcag--------------------------
|| ||||| ||||   || | ||  |  | ||  |||| ||||||||||| |||||||||||||| |||||| |    |    |   |  | | |   |   ||   || ||  || |   |||  ||  |  | |   || ||                           
CTTCTTAATGTGAGCACAAATGACATACTGATCCAGTCCACTGGTGTTATTGGTCAGAGAATAAAGAAGgtacagtgctgccacaaccaaactatggttgagtgactgtactaaactag--taggctaacctagtacaatttcatctgacgcttgggttttgacaatgcag

upper sequence: AT2G37500.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G05090.1 (Glycine max), 5'ss of exon 6
CTACTTAAAGTGAAGCCAGAGGAAGTGTTAATTGAGTCAACTGGTGTTATCGGTCAGAGAATAAAAAAGgtata------acttatttctt---tctcatttttcctccatgcaagtgcttgacaaagttagtttac-tcgt-------gaatctttgcag-----------------------------------------------------------------------------------
||| | |||||||||||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||||||| |         |   | ||   | | || |    ||     | || |||    |  ||  |||   || |        |   ||  ||                                                                                    
CTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAGTCCACTGGTGTAATTGGTCAAAGAATAAAAAAGgtaaatgcagagactgcatattgggttttatatcctgtctgcttatgtcctttgtgatattgctttctgtcatttggacaaagcattcacaaaattctggacagaacaattgaaaagcattccaacaaacttaaattctgttgcttcaatttatatacactcattttatttgcag

upper sequence: AT2G37500.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA13G19450.1 (Glycine max), 5'ss of exon 7
CTACTTAAAGTGAAGCCAGAGGAAGTGTTAATTGAGTCAACTGGTGTTATCGGTCAGAGAATAAAAAAGgta------taacttatttctt---tctcatttttcctccatgcaagtgcttgacaaagttagttt-------actcgtgaatctttgcag-----------------------------------------------------
||| | |||||||||||||| ||||| |||||||| || |||||||| || ||||| |||||||||||||||      ||   |   | ||   | | || |    ||       || |||    |  ||  |||       |      || | || ||                                                      
CTATTGAAAGTGAAGCCAGAAGAAGTATTAATTGAATCCACTGGTGTAATTGGTCAAAGAATAAAAAAGgtaaatgcatagactgcatattgggttttatatcctgtctgcttgtgtcctttgtgatatttctttctgtcatatggacaaagcatttcaacaaacttaaattctgttgttttcaatgttatatacttctcattttatttgcag

upper sequence: AT2G37500.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv08s0040g03320.t01 (Vitis vinifera), 5'ss of exon 7
CTACTTAAAGTGAAGCCAGAGGAAGTGTTAATTGAGTCAACTGGTGTTATCGGTCAGAGAATAAAAAAGgtataacttattt--ctttctcatttttcctccatgcaagtgcttgacaaagttagtttactcgtgaatctttgcag-------------------------------------------------------------------------
|||||  || ||| ||||||||||||||| || || || ||||||||||| ||||| |||||||| |||||| ||     ||  | |  |  ||| |  | | ||| | |||| |  | ||  | ||   |  |   |  |||                                                                            
CTACTGCAAATGAGGCCAGAGGAAGTGTTGATCGAATCTACTGGTGTTATTGGTCATAGAATAAAGAAGgtaaaagaagatttgcatgtttctttgttttacttgcgattgctggtgataggaatttgtatgatactttcttgtgttcaatttttccatttcttttatcttttttttttatcatacacagttcagattattggataaattcatatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124787522|gb|EH877201.1|EH877201
EST:     GAGAATAAAAAAG                         GAAGAGCTTCTCCACGCACTTCCAACTCTAGTCAACTCGAGATCAGACTCT
genomic: GAGAATAAAAAAGgtataactta ... atctttgcagGAAGAGCTTCTCCACGCACTTCCAACTCTAGTCAACTCGAGATCAGACTCT