1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTGgtaagtttaagagtatatgaatcattcattccttctggttagagatcgatgagattactttccgtttttcttaacaactattgtcacggaccttgtgcag
species | Arabidopsis thaliana |
transcript | AT2G37240.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTG GCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTAEST: gi|116467378|gb|EG509970.1|EG509970
genomic: CAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTGgtaagtttaa ... ccttgtgcagGCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTA
EST: CAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTG GCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTAEST: gi|116467371|gb|EG509963.1|EG509963
genomic: CAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTGgtaagtttaa ... ccttgtgcagGCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTA
EST: CAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTG GCAACAAGGCGGAATTTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTAEST: gi|125186352|gb|EL201306.1|EL201306
genomic: CAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTGgtaagtttaa ... ccttgtgcagGCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTA
EST: AAAGAGGCGGCTG GCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTAEST: gi|125251334|gb|EL265419.1|EL265419
genomic: AAAGAGGCGGCTGgtaagtttaa ... ccttgtgcagGCAACAAGGCGGAATCTTAGTTGCTGGCCCTGGGAAAGATAACATCTCTTA
EST: CAAGACTGGAAACTCTCGTTTATGAA-GATACAGTTGAAAGAGGCGGCTG GCAACAAGGCGGAATCTTAG
genomic: CAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTGgtaagtttaa ... ccttgtgcagGCAACAAGGCGGAATCTTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGGAAACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTGgtaagtttaagagtatatgaatcattcattccttctggttagagatcgatgagattactttccgtttttcttaacaactattgtcacggaccttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG