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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTGGAGCTTGGTAACTGCAAGGGGAAACACTCTAAATTGATAAGCGATATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACGgtaagcaagaatctgtgatcaatcaaacatgcttagaaattgcagttttgattctcaagagtttgttgttactggtttcag

Basic information

species Arabidopsis thaliana
transcript AT2G36310.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125039468|gb|EL111737.1|EL111737
EST:     TATGTGC-AATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACG                         GAGTGTACCTCCATGACCCAG
genomic: TATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACGgtaagcaaga ... ctggtttcagGAGTGTACCTCCATGACCCAG
EST: gi|116442245|gb|EG484837.1|EG484837
EST:     AATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACG                         GAGTGTACCTCCATGCCCCAGTCAGCTTTGTGGCTGTAGTACGGCCTGATT
genomic: TATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACGgtaagcaaga ... ctggtttcagGAGTGTACCTCCATGACCCAGTCAGCTTTGTGGCTGTAGTACGGCCTGATT
EST: gi|164001319|gb|ES078835.1|ES078835
EST:     TATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACG                         GAGTGTACCTCCATGACCCAGTCAGCTTTGTGGCTGTAGTACGGCC
genomic: TATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACGgtaagcaaga ... ctggtttcagGAGTGTACCTCCATGACCCAGTCAGCTTTGTGGCTGTAGTACGGCC
EST: gi|86074635|gb|DR370392.1|DR370392
EST:     TATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACG                         GAGTGTACCTCCATGACCCAGTCAGCTTTGTGGCTGTAGTACGGCCTGATT
genomic: TATGTGCAAATTTTATAGAGATTGGCACGTCAAATCTGATGGTGTTTACGgtaagcaaga ... ctggtttcagGAGTGTACCTCCATGACCCAGTCAGCTTTGTGGCTGTAGTACGGCCTGATT