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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCGACGCCCAGATTTGCGTCTTATTCTGATGAGTGCTACGATTAACGCTGACATGTTCTCAACATACTTTGGGAACTCTCCCACTATGCACATCCCGgtatgtctagttgtaaatccagtgacttgtttatgatctgatattcgtgacttatctcttttcaacttattgccag

Basic information

species Arabidopsis thaliana
transcript AT2G35920.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G10180.1 (Glycine max), 5'ss of exon 7
TCCTCGACGCCCAGATTTGCGTCTTATTCTGATGAGTGCTACGATTAACGCTGACATGTTCTCAACATACTTTGGGAACTCTCCCACTATGCACATCCCGgtatgtctagttgtaaat------ccagtgactt--gtttatga--tctgatattcgtgacttatctc--ttttcaacttattgccag-----------
|||  | || |||||||||||||| |||||||||||||| || ||||| ||||| |||||||| | ||||||||  ||  | || || |||||||| ||||||||  |  || || ||        |   | ||   ||| ||   |   ||     | |  ||| ||  ||||  | ||||     |           
TCCAAGGCGTCCAGATTTGCGTCTCATTCTGATGAGTGCCACCATTAATGCTGATATGTTCTCTAAATACTTTGCCAATGCCCCAACAATGCACATACCGgtatgaattattttatatttcacattatcaatttaaatttgtggatttcaatgcaaataaagtatttctgttttttaattatatttggacatgtgtcag

upper sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G35240.1 (Glycine max), 5'ss of exon 9
TCCTCGACGCCCAGATTTGCGTCTTATTCTGATGAGTGCTACGATTAACGCTGACATGTTCTCAACATACTTTGGGAACTCTCCCACTATGCACATCCCGgtatgtctagttgtaaatccagtga--------cttgtttatga--tctgatattcgtgacttatctct----tttcaacttattgccag-------------
|||| | || |||||||||||||| |||||||||||||| || ||||| ||||| |||||||| | ||||||||  ||  | || || |||||||| ||||||||  |  || || ||    |          | | ||| ||   |   ||     | |  |||  ||    |||  | ||||     |             
TCCTAGGCGTCCAGATTTGCGTCTCATTCTGATGAGTGCCACCATTAATGCTGATATGTTCTCTAAATACTTTGCAAATGCCCCAACAATGCACATACCGgtatgcatgattttatatttcatattatcaattcatatttgtggatttcaatgcaaataaagtattcctatgttttttaattatatttggacatatgtgccag

upper sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 7
TCCTCGACGCCCAGATTTGCGTCTTATTCTGATGAGTGCTACGATTAACGCTGACATGTTCTCAACATACTTTGGGAACTCTCCCACTATGCACATCCCGgtatg---------tctagttgtaaatc-cagtgacttgt-ttatgatctgat-----------------attcgtgacttatctcttttcaacttattgccag
|||||| || |||||| ||||||||||||| ||||||||||| ||||| |||||| ||||||| | ||||||||| ||  | || ||||| || || |||||||          | ||||  | |    | | ||| ||| || ||| || ||                 |||  ||   |||     |||||  |  || |||
TCCTCGGCGACCAGATCTGCGTCTTATTCTAATGAGTGCTACCATTAATGCTGACTTGTTCTCCAAATACTTTGGAAATGCCCCAACTATCCATATACCGgtattgtggatctttttagtcttgagctgctgggacatgtgttttgaacttattcaacacatatttgtgtatttatgcaatattatccttcaatatgctggcag