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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTTTCATTGCGTTTAAACCATCGATTCCAAAAAGCTTGTTACTTGACGGGAAGCATACCATTGAATCGCATTTTATCCTCGTTAATCACCAAgtaacaactactaacctaacatgatccctcagaactatatgctaacttgaccacctttctaattttacatccacctttggtccactttacag

Basic information

species Arabidopsis thaliana
transcript AT2G35610.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA11G09650.1 (Glycine max), 5'ss of exon 6
GAGGTTTCATTGCGTTTAAACCATCGATTCCAAAAAGCTTGTTACTTGACGGGAAGCATACCATTGAATCGCATTTTATCCTCGTTAATCACCAAgta-acaactactaacctaa--catgatccctcagaactatatgctaacttgaccacctttctaattttacatccacctttggtcca---ctttacag
| || ||| |  | ||||| ||||| ||||||||||||||||| ||    ||||| ||||||||||||||||||||||  || |||||| ||||||||  ||  ||   |||| |  | |    | || | | |  |  |  |    |  |  || |   || || ||  |  ||           ||| |||
GGGGCTTCTTGTCATTTAAGCCATCTATTCCAAAAAGCTTGTTGCTAAGTGGGAATCATACCATTGAATCGCATTTTAGACTTGTTAATTACCAAgtatgcatgtatcgacctgatccttttcacttctgcatttgaaacagaaactatgatgttacatcttcta-atttatgttgtacatgaatttttccag

upper sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G35690.1 (Glycine max), 5'ss of exon 8
GAGGTTTCATTGCGTTTAAACCATCGATTCCAAAAAGCTTGTTACTTGACGGGAAGCATACCATTGAATCGCATTTTATCCTCGTTAATCACCAAgta-acaactactaacctaa--catgatccctcagaact--atatgctaact-tga--ccacctttctaattttacatccacctttggtccactttacag
| || ||| |  | ||||| || || ||||||||||||||||| ||    |||||||||||||||||||| |||||||  || |||||| ||||||||  ||  || | | || |  | |    | || | | |  | |    |||| |||    || | ||| | ||||  |    | |   |           
GGGGCTTCTTGTCATTTAAGCCTTCTATTCCAAAAAGCTTGTTGCTAAGTGGGAAGCATACCATTGAATCACATTTTACACTTGTTAATTACCAAgtatgcatgtattgatctgatccttttcacttctgcatttgaaacagaaactatgatgttacatctcttaatttatgttgtacatgaatttgtccag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164024771|gb|ES072596.1|ES072596
EST:     TTGACGGGAAGCATACCATTGAATCGCATTTTANCCTCGTTAATCACCAA                         ATGAAACNGATC
genomic: TTGACGGGAAGCATACCATTGAATCGCATTTTATCCTCGTTAATCACCAAgtaacaacta ... cactttacagATGAAACAGATC