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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttctcttcttggtctgatcatatttgttttgagaaagaatatgaaagataaactaatagaatagcttagagaacaaggaaatataaaccggtttgttctgttactcatgaaatcctctttgtcatttgctttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT2G35260.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116398417|gb|EG441009.1|EG441009
EST:     TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAG                         CTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTC
genomic: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTC
EST: gi|116414687|gb|EG457279.1|EG457279
EST:     TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAG                         CTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAG
genomic: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAG
EST: gi|116414696|gb|EG457288.1|EG457288
EST:     TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAG                         CTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAG
genomic: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAG
EST: gi|164157425|gb|ES141031.1|ES141031
EST:     TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAG                         CTTGGTATGAGAAGAGACAGATGAAGTAAGA
genomic: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGACAGATGAAG-AAGA
EST: gi|124966240|gb|EL040357.1|EL040357
EST:     TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAG                         CTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACT
genomic: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACT
EST: gi|125049590|gb|EL121859.1|EL121859
EST:     TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAG                         CTTGGTATGAGAAGAGA
genomic: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGA
EST: gi|116414695|gb|EG457287.1|EG457287
EST:     TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAG                         CTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAG
genomic: TGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAG
EST: gi|124915962|gb|EH989836.1|EH989836
EST:     TGATTTTAAGAAGCTTTTGTCAG                         CTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAG
genomic: TGATTTTAAGAAGCTTTTGTCAGgtacttgttc ... ctttgtgcagCTTGGTATGAGAAGAGACAGATGAAGAAGATTTACTCTCCACTCCTTGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCCGACATACATAGTTGCCCCGGTTTTAAGGTCACGGCGAGATGATTTTAAGAAGCTTTTGTCAGgtacttgttctcttcttggtctgatcatatttgttttgagaaagaatatgaaagataaactaatagaatagcttagagaacaaggaaatataaaccggtttgttctgttactcatgaaatcctctttgtcatttgctttgtgcag

- - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC