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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgtcatttcaattgcacagttaattagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaagatgctcatgaaaacttttacttcttccag

Basic information

species Arabidopsis thaliana
transcript AT2G34410.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os01g44040.2 (Oryza sativa), 5'ss of exon 7
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgtcatttcaattgcacagttaattagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaa-----gatgctcatgaaaacttttacttct--tccag
|||  | ||||||||||||||||| |||||||||||||| |||||||||||||| || || ||||| |  || || ||    || ||  ||||| |||||||     || |   |   ||||        |  |  |||||| | ||   | |  | ||  ||||  ||| | ||     | |   ||   | |    || ||||  | |||
AATTCGTGTTTTCATTGCTGCCTATGTCTGGATGACTGGATTTGGGAACTTCTCATACTATTATATTAAGAAAGACTTTAGTCTTGCCAGATTTGCTCAGgtg---ccattctgatctttaaccc-caatctgttctatatgatactttagtatgttttcatttccttgatttaatgcatggtttacactgacaaccatatttctaatgcag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 7
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgtcatttcaattgcacagttaattagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaagatgctcatgaaaacttttacttcttccag
|||  |||| |||||||||||||| |||||||||||||| || ||||| ||||| ||||| |||||||  || |||||   | | ||| ||||| | |||||   ||| ||   |     |||||    |   || |   | |  ||    ||  ||||||   ||     |  | || || | ||  |  |||  |   | |||
AATTCGGGTGTTCATTGCTGCCTATGTCTGGATGACTGGATTCGGGAATTTCTCATATTATTATATCAAGAAAGATTTTAGCATTGCAAGATTTGCACAGgt---ttccatccta-gcccaattatccaatgttgtttcttacccctt---gatttgttgtaaccatc--ttagaaatactaaagaccatcttt--taaatgcag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G147351_T01 (Zea mays), 5'ss of exon 1
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgt---catttcaattgcacagttaattagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaagatgctcatgaaaacttttact---tcttccag----
|||| | || |||||||||  ||| |||||||||||||| |||||||| ||||| |||||||||||||  || |||||     | ||| ||||| |||||||    ||   |  |   ||||    |  |   | |||   ||      | ||   | |||  || |   |  | |    |   ||  | | |  | |||     |||||     
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCATATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgcctatgctacctcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcactagaccaataactatactttccatgcag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G370741_T01 (Zea mays), 5'ss of exon 2
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgt---catttcaattgcacagttaattagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaagatgctcatgaaaacttttact---tcttccag----
|||| | || |||||||||  ||| |||||||||||||| |||||||| ||||| |||||||||||||  || |||||     | ||| ||||| | |||||    ||   |  |   ||||    |  |   | |||   ||      | ||   | |||  || |   |  | |    |   ||  | | |  | |||     |||||     
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCGCAGgtgcctatgctacctcatcagtcttattttctgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcactagaccaataactatactttccatgcag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G458538_T01 (Zea mays), 5'ss of exon 2
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgt---catttcaattgcacagttaattagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaagatgctcatgaaaacttttact---tcttccag----
|||| | || |||||||||  ||| |||||||||||||| |||||||| ||||| |||||||||||||  || |||||     | ||| ||||| |||||||    ||   |  |   ||||    |  |   | |||   ||      | ||   | |||  || |   |  | |    |   ||  | |||  | |||     |||||     
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCATATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgcctatgctacctcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcactagaacaataactatactttccatgcag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: AC218988.3_FGT003 (Zea mays), 5'ss of exon 2
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgt---catttcaattgcacagttaattagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaagatgctcatgaaaacttttact---tcttccag----
|||| | || |||||||||  ||| |||||||||||||| |||||||| ||||| |||||||||||||  || |||||     | ||| ||||| |||||||    ||   |  |   ||||    |  |   | |||   ||      | ||   | |||  ||||   |  | |    |   ||  | | |  | |||     |||||     
AATCTGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgtctatgctacctcatcagtcttattttgtgctatgccctaatgagtttagtctcctgtattttttgttaccgccttttaagcactagaccaataactatactttccatgcag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: AC208418.3_FGT009 (Zea mays), 5'ss of exon 3
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgt---catttcaattgcacagttaattagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaagatgctcatgaaaacttttact---tcttccag----
|||| | || |||||||||  ||| |||||||||||||| |||||||| ||||| |||||||||||||  || |||||     | ||| ||||| |||||||    ||   |  |   ||||    |  |   | |||   ||      | ||   | |||  ||||   |  | |    |   ||  | | |  | |||     |||||     
AATCTGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgtctatgctacctcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtattttttgttaccgccttttaagcactagaccaataactatactttccatgcag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G463445_T01 (Zea mays), 5'ss of exon 2
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgt---catttcaattgcacagttaattagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaagatgctcatgaaaacttttact---tcttccag----
|||| | || |||||||||  ||| |||||||||||| | |||||||| ||||| |||||||||||||  || |||||     | ||| ||||| |||||||    ||   |  |   ||||    |  |   | |||   ||      | ||   | |||  || |   |  | |    |   ||  | | |  | |||     |||||     
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTAGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgcctatgctacctcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcactagaccaataactatactttccatgtag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G076394_T01 (Zea mays), 5'ss of exon 7
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgtcatttcaattgcacagttaattagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaagatgctcatgaaaacttttacttcttccag--
|||| | || |||||||||  ||| |||||||||||||| |||||||| ||||| || ||||| |  |  || ||||||    | ||| ||||| |||||||      |    | |  |  | |  | ||||   |       || | ||        |  | | ||   |  || ||  ||      |  |||| ||||  ||   
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCATACTACTACAAGAAGAAAGATTTCAGTATCGCAAGATTTGCTCAGgt------acccacccgttggact--tcgacctcaa-----attttttag--------ttctctaaaattccgaacatcatcgacggcaactttatttctaacacag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 8
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgtcatttcaattgcacagttaattagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaagatgc-tcatgaaaacttttacttcttccag-----------
|||  | |||||||||||||| || || ||||||||||| ||||| |||||||| ||||| ||||||||||| |||||   |||  |||| ||| ||||||| |     ||||  |  |||| ||           ||  || |    |  | |      ||| | || ||||    ||| | |  || |    ||  || |  |            
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaagagtcattgacc--ttaaataccattttgctttacttggtatccattgtctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttcttgcag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgtcatttcaattgcacagttaattagttgaccatgatata---tgcttctaagggacatgttgttttcaatgactcaagatgc-tcatgaaaacttttacttcttccag-----------
|||  | |||||||||||||| || || ||||||||||| ||||| |||||||| ||||| ||| | ||||| |||||   |||  |||| ||| ||||||| ||             |||| ||        || | ||   ||  || |  |   ||  | ||| |  | ||||    ||| | |  || |    ||  || |  |            
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtccttgaccttaaata-ccatttttgctttactttgtgtccactgtctatcct-tttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgtcatttcaat-----tgcacagtta-attagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaa----gatgctc----atgaaaacttttacttcttccag---
|||  | || || |||||||| || |||||||||||||| ||||| |||||||| ||||| || ||||| ||||||||   ||| ||||| ||||| ||||| |  |   |     || || |||  || | ||  | || | |  || |  |  |   | | |  ||||| ||   ||||    |||  |     |||  ||  |||||||  |   |   
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatatt--gttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S357_34V6.1 (Physcomitrella patens), 5'ss of exon 7
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgtcatttcaattgcacagt---taattagttgaccatgat----atatgcttctaagggacatgttgttttca-----atgactcaagatgctcatgaaaact---tttacttcttccag-----------------------------------------
 ||  | ||||| |||||||||||||| |||||||| |||||||| ||||| ||||| || || ||  | || || ||   | | |  || ||| | |||||   |   |  |    |    | |||||| | |  | ||     |  |  |   |  |  |   |||||||      | || |  |  || ||||| |       || |  | || ||                                          
CATTCGAGTTTTTATTGCTGCCTACGTTTGGATGACGGGGTTTGGCAACTTTTCTTACTATTACATTCGCAAAGACTTTAGCTTGGGCCGTTTTGCACAGgtatgtatgagcgtcttgaatatgattagt-ggcggtaattttggtgcgggttgcactgttagcctgttttcggaactacgaattcaagtgttcatgtacctccagttaatgtttttcaaaaatcgaaggggtaccttaatagtgcttgatgatgtgacag

upper sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S74_21V6.1 (Physcomitrella patens), 5'ss of exon 7
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAG---------CAC-GATTTACTCAGgtcatttcaattgcac-agttaattagtt--gaccatgatatatgcttctaag-ggacatgttgtttt-caatgactcaagatgctcatgaaaacttttacttcttccag------------------------------------------
 ||  |||| ||||||||||||||||| |||||||| || ||||| ||||| || || || ||  |  |||| |||||   | | |         ||| | |||  |||| ||  || |  || || |||| ||||  |  | | ||||  | | || | ||   |  |||  | | |    | | |||  || |  ||     ||| |  |  ||  |                                           
TATTCGGGTGTTCATTGCTGCCTACGTTTGGATGACGGGTTTTGGCAACTTTTCGTACTATTACGTTCGAAAAGATTTTAGCTTGGGTCGTTTTGCACAGgtttgttcagttcgctttatctgtaccagttgattatcttggtctatgaggtgtactgcaaaccagttatgaggatgtgtgttaattcatcatac--attgtttcttgttttgtttttaaggaattgttagcacacgttaacggtttttagtgccatgacag