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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATTTGTTCGATGTTTCGTGGACCAAAAGGCGATGGAACATCTTATAACTGAAAAGCTTGGGCTTGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTGgtaagtattctcaaagaaaatactggtttattctgttttctatcaatgcttagtttccgacttgagcttgctttctcattctgcag

Basic information

species Arabidopsis thaliana
transcript AT2G33640.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116401160|gb|EG443752.1|EG443752
EST:     CTGGGAAGCTTGGGCTTGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTG                         GTTGTTTGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGGGAACT
genomic: CTGAAAAGCTTGGGCTTGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTGgtaagtattc ... cattctgcagGTTGTTTGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGG-AACT
EST: gi|116400822|gb|EG443414.1|EG443414
EST:     CTGAAAAGCTTGGGCTTGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTG                         GTTGTTTGTACAACTCTCTCGTTACTGGCTCTGATACCTCTTGGGGAACTT
genomic: CTGAAAAGCTTGGGCTTGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTGgtaagtattc ... cattctgcagGTTGTTTGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGGAACTT
EST: gi|116401153|gb|EG443745.1|EG443745
EST:     CTGAAAAGCTTGGGCTTGAATTCTCCCGTCCTCCATTTGCCGCTGTTGTG                         GTTGTTCGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGGAACTT
genomic: CTGAAAAGCTTGGGCTTGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTGgtaagtattc ... cattctgcagGTTGTTTGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGGAACTT
EST: gi|116401154|gb|EG443746.1|EG443746
EST:     ATTTGCCGCTGTTGTG                         GTTGTTTGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGGAACTT
genomic: ATTTGCCGCTGTTGTGgtaagtattc ... cattctgcagGTTGTTTGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGGAACTT
EST: gi|116401161|gb|EG443753.1|EG443753
EST:     CTGAAAAGCTTGGGCTT-GGTTCTCCCGTCCTCCATTTGCCGCTGTTGTG                         GTTGTTTGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGGAACTT
genomic: CTGAAAAGCTTGGGCTTGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTGgtaagtattc ... cattctgcagGTTGTTTGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGGAACTT
EST: gi|116400801|gb|EG443393.1|EG443393
EST:     CTGAAAAGCTTGGGCTTGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTG                         GTTGTTTGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGGAACTT
genomic: CTGAAAAGCTTGGGCTTGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTGgtaagtattc ... cattctgcagGTTGTTTGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGGAACTT
EST: gi|116400802|gb|EG443394.1|EG443394
EST:     CTGAAAAGCTTGGGCTTGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTG                         GTTGTTTGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGGAACTT
genomic: CTGAAAAGCTTGGGCTTGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTGgtaagtattc ... cattctgcagGTTGTTTGTACAACTCTCTCGTTACTGGCTTTGATACCTCTTGGGGAACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTATTTGTTCGATGTTTCGTGGACCAAAAGGCGATGGAACATCTTATAACTGAAAAGCTTGGGCTTGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTGgtaagtattctcaaagaaaatactggtttattctgttttctatcaatgcttagtttccgacttgagcttgctttctcattctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT