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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGAATAGAGGTCTTTTGTCTTCCGGGATTATGGCTTCTTACATTGTCTTCCTATGTTGGTCTGCGATCAGAAGgtaaagacaaatacaacatctgatttttgtttgtttagttcttcaaagcattactaaagtagaagttttgtatcag

Basic information

species Arabidopsis thaliana
transcript AT2G33205.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33205.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G19930.1 (Glycine max), 5'ss of exon 7
GTGAAGAATAGAGGTCTTTTGTCTTCCGGGATTATGGCTTCTTACATTGTCTTCCTATGTTGGTCTGCGATCAGAAGgtaaaga----caaataca-acatct----gatttttgtttgtttagttcttcaaagcattac----taaagtagaagttttg-tatcag----------
      |||||||||||||| ||||| || ||||||||||||||| |||| ||||| ||||||  ||| |||||||||| | ||    | ||  || | ||||     |   || |||| ||| || |  | | |||  |    | |  ||  |||| ||   || |          
---GTTAATAGAGGTCTTTTATCTTCAGGAATTATGGCTTCTTACGTTGTTTTCCTTTGTTGGAATGCAATCAGAAGgtcaggattctctaacccataaatctctataacggttctttggttaattttagacaccatatcacttttatatattagttctgacttctgagggtctctt

upper sequence: AT2G33205.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv05s0051g00380.t01 (Vitis vinifera), 5'ss of exon 7
GTGAAGAATAGAGGTCTTTTGTCTTCCGGGATTATGGCTTCTTACATTGTCTTCCTATGTTGGTCTGCGATCAGAAGgtaaaga--------caaatac----aacatctgatttttgtttgtttagttcttcaaagcatt--actaaagta--gaagttttgtatcag-------
      ||||||||||| || ||||| ||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||| |  |        |||| |     |    |||  ||    |  ||| |    | |   ||||  ||| |  |    |||  ||  |  |        
---GTCAATAGAGGTCTCTTATCTTCAGGGATCATGGCTTCTTATATTGTTTTCCTCTGTTGGTCTGCTATCAGAAGgttagaaatctctcccaaacattctaagtcactggcttggactcatttcgagtattatgccatttcacttagctgccaaagactttaaaaattttccag