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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGCTGTTTCGAAGTGGGATGCAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGgtaagctgaacaatcttcctacattcaatttctatttcccagtttgtatgttgctcacatcaataacgtggtcaattgttttgttgaaaatatctgcag

Basic information

species Arabidopsis thaliana
transcript AT2G32430.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os02g06840.2 (Oryza sativa), 5'ss of exon 8
GAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGCTGTTTCGAAGTGGGATGCAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGgtaagctgaacaatcttcctacattcaatttctatttcccagtttgtatgttgctcacatcaataacgtggtcaattgttttgttgaaaatatctgcag--
|   |||| |||||||| || ||||| ||| |||| ||||||||   |||||||||||| || ||||| || || |||||||| || |||||||| || |||||        |||||  ||    |   |  | ||      |    || ||    |  | || |     |  || || |    |     |  |  ||   
GCACTATCTGGCAAAACCAAGACATACTTTGCTACGGCTGTTTCATTGTGGGATGCAGACTTTTATGTGAAGGTTGATGATGACGTGCATGTAAACATAGgtaaatctccatatcttt-tatgcccttctattgttcttttttgaacattttatcgatcttaagatgagaggaaagtgatcatatctgtgtgccgccatca

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g38050.1 (Oryza sativa), 5'ss of exon 7
GAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGCTGTTTCGAAGTGGGATGCAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGgtaagctgaacaatcttcctacattcaatttctatttcccagtttgtatgttgctcacatcaataacgtggtcaattgttttgttgaaaatatctgcag---
|| ||  | |  || |||||| | |  |||   |||||  | || | |||||||||||||| |||  | ||||| ||||||||||| ||||||||||| |||  ||   || | | ||  |  |  ||  ||   | ||    ||   ||||  |      || |   || | | ||  | | ||  |  ||  |  |    
GAATTGGCTGCAAAGACGAAATCGTTCTTTGTGACAGCCTTGTCCATGTGGGATGCAGAGTACTACATTAAAGTGGATGATGATGTACATGTAAATATAGgtgtgcattactaccctctga--tctaacatcatatcccttcattaagtgttttttctgctaaaattttgattagttcatatattttacttacattaaattt

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os06g46570.2 (Oryza sativa), 5'ss of exon 7
GAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGCTGTTTCGAAGTGGGATGCAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGgtaagctgaacaatcttcctacattcaatttctatttcccagtttgtatg-ttgctcacatcaata-acgtg-----gtcaattgttttgttgaaaatatctgcag-
|| || || |||||||| || ||||| ||| |||||||||||||    |||||||| || |||||||| || || || |||||||| ||||| ||||| ||| |       | ||||  |       || | |  ||   | | |||||| |||  || |  |||  | ||      ||||  | | ||  | ||  | |    |  
GAATTGTCTGGCAAAACCAAGACATACTTTGCTACAGCTGTTTCTTTATGGGATGCTGACTTCTATGTGAAGGTTGACGATGATGTGCATGTTAATATAGgtga-------agtctttgtgttgaacatctgtcctttttaatctgtatggttgtacaaagtaatctatgtctgactgtcatgtttctttctaaagctcttaatata

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G10520.1 (Glycine max), 5'ss of exon 7
GAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGCTGTTTCGAAGTGGGATGCAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGgtaa-gctgaacaatcttcctacattcaatt-tctattt---cccagtttgtatgttgctcacatcaataacgtggtcaattgttttgttgaaaatatctgcag-------------------------
|| || ||||  || || ||||| || ||| | || |||||       |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||    |    ||  |||  | | ||  || | |||     |     || |||||| ||    | ||||||   |    |  |||  |    | | | ||                            
GAATTGTCAGCAAAGACAAAAACCTACTTTGCCACTGCTGTGAACTTATGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGgtattaatagtaaagtttctgataatctcttatgtataaaagcatgagttttatgtttctatagtaaataaccatgatgttgttttaatatgtactgtttgtcttagcattatattctttctgtttcag

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA06G46230.1 (Glycine max), 5'ss of exon 7
GAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGCTGTTTCGAAGTGGGATGCAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGgta--agctgaac--aatcttcctacattcaatt--tctatt-----tcccagtttg---tatgttgctcacatc--aataacgtggtcaattgttt--tgttgaaaatatctgcag---------------------------------------------------------------------------------
|| || ||||  || || ||||| || ||| | || |||||       |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||  |   |  |  ||  |||  | | ||  ||  | ||||     ||   |  ||   | | |||   || ||   | |  ||  || |||  |   |||  |||| | |   ||                                                                                 
GAATTGTCAGCAAAGACAAAAACCTACTTTGCCACTGCTGTGAACTTATGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGgtattaatagttctaaagtttctgataatctcttactttattatgtatcaaggcatgagttttattgtaaacctcctgacactgtcttcgattcctaagtgtaaaaaaaagcatgagttttatgtttctatagtaagtaatcatgatgttgttttagtatgtactttttgtcttagtgtcatattctttcggtttcag

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G31980.1 (Glycine max), 5'ss of exon 7
GAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGCTGTTTCGAAGTGGGATGCAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGgtaagctgaacaatcttcctacattcaatt-tctatttcccagtttgtatgttgctcacatcaataacgtggtcaattgttttgttgaaaatatctgcag------------------------------------------------------------------------------------------------
|| || ||||  || || || ||||| ||| | || ||||||      |||||||| || |||||| ||||||| ||||| ||||||||||||||||| ||||   |  | | | |  | |  |  |||| ||||        |  | |  ||||       | |   ||   |  ||   | |||  | |||    |                                                                                                  
GAATTGTCAGCAAAGACAAAGACATACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATCAAAGTTGATGACGATGTTCATGTAAATATAGgta---tataaagtttctcaatctctaattatctaaccttgcatgaggagtttgcaattgaaattgttgtatccttttaactagttccacatactaactatcatccatggattcatgttccgtacatacttagtatgcatcatgtaatttctatcttaatatttttcttagtatgccctattcaatcctttttcag

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv12s0059g00640.t01 (Vitis vinifera), 5'ss of exon 7
GAGTTATCAGGCAAAACGAAAACATATTTTTCTACAGCTGTTTCGAAGTGGGATGCAGAGTTCTATGTCAAAGTAGATGATGATGTTCATGTAAATATCGgtaagctgaacaatcttcctacattcaatttctatttcccagtttgtatgttgctcacatcaataacgtggtcaattgttttgttgaaaatatctgcag--
||  | || | ||| || || | ||||||| |||| |||||| |   ||||||||||||||||||  | ||||| ||||||||||| ||||||||||| ||||  || |    |    ||  |||    ||   |||    || |      |  | |  | || |   |  | | ||  |||        ||| |      
GAACTGTCTGCCAAGACAAAGATATATTTTGCTACTGCTGTTGCTTTGTGGGATGCAGAGTTCTACATTAAAGTTGATGATGATGTCCATGTAAATATAGgtat-ctaatatgttaatctctattatgatttcttttgtgggtgtcatccataataatctgaaaagtcttataatttagttttcctttcttattttagata