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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCCATCAGGATCTTTCTTGAAGATGGTCATCATATTGGAATTTCTCAGTCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAGgtattcatttttctcaacaaagaacatcgttttcttcctacacgaaggaaaatatggaaattagaaagtacagatatcagcattttaaaaatttggattgtaggcgtcaacaaattgtatgaaatagccatcatacaggttcatttagtgatgaagtaaaaactgaatatgaacatgacaactttgtcttctactgcag

Basic information

species Arabidopsis thaliana
transcript AT2G30970.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G30970.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os02g14110.1 (Oryza sativa), 5'ss of exon 6
AGTCCATCAGGATCTTTCTTGAAGATGGTCATCATATTGGAATTTCTCAGTCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAGgtattcatttttctcaacaaagaacatcgttttcttcctacacgaaggaaaatatggaaattagaaagtacagatatcagcattttaaaaatttggattgtaggcgtcaacaaattgtatgaaatagccatcatacaggttcatttagtgatgaagtaaaaactgaatatgaacatgacaactttgtcttctactgcag
|| | ||| | ||||| ||||||||||| ||||| ||||||  | ||||||| |||||||| ||||||||||| || || || ||||  || ||  | ||||||||| |   ||        |   || |||         | |   |||| |     | ||    | | ||| |      ||  |    || |   |   ||||   ||  | ||  ||                                                                               
AGGCAATCCGAATCTTCCTTGAAGATGGGCATCAAATTGGATGTGCTCAGTCATATGCAAAGAACATGGGACTGTATGGGCAAAGGGCAGGGTGCTTGAGgtattcactcgcct--------agtgtcattt---------atgcttgaaagttatatagttgtgcaatgcag-tgctcctatgctctggatataattaagaggcacaaa--atttacat-------------------------------------------------------------------------------

upper sequence: AT2G30970.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os06g35540.1 (Oryza sativa), 5'ss of exon 6
AGTCCATCAGGATCTTTCTTGAAGATGGTCATCATATTGGAATTTCTCAGTCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAGgtattcatttttctcaacaaagaacatcgttttcttcctacacgaaggaaaatatggaaattagaaagtacagatatcagcattttaaaaatttggattgtaggcgtcaacaaattgtatgaaatagccatcatacaggttcatttagtgatgaagtaaaaactgaatatgaacatgacaactttgtcttctactgcag
|| | ||  | || |||||||||||||| ||||| ||||||  | | ||||| ||||| |||||||||||||| || || || || |  ||||| || ||||||||||||  ||     ||        |||| ||| |   | |  |   ||    |  |       |  |  |||     ||||  | ||||   |  |     |                                                                                            
AGGCAATTCGAATATTTCTTGAAGATGGACATCAAATTGGATGTGCACAGTCATATGCGAAAAACATGGGACTTTATGGACAAAGAGCAGGATGCCTTAGgtattcatttccctgttttaattgtcctttttttttcttctgcaacagctcattcccatctct-----tttaattatgtttgttttggatattt---tcctgtctttt-------------------------------------------------------------------------------------------

upper sequence: AT2G30970.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv12s0028g01820.t01 (Vitis vinifera), 5'ss of exon 6
AGTCCATCAGGATCTTTCTTGAAGATGGTCATCATATTGGAATTTCTCAGTCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAGgtattcatttttctcaacaaagaacatcgttttcttcctacacgaaggaaaatatggaaattagaaagtacagatatcagcattttaaaaatttggattgtaggcgtcaacaaattgtatgaaatagccatcatacaggttcatttagtgatgaagtaaaaactgaatatgaacatgacaactttgtcttctactgcag
||||||||| ||| || ||||||||||||||||  ||||| ||| | || || ||||||||||||||||||||||| |||||||| |||||||| || ||||| |  |            || | |   | ||    ||    |   || | | |    ||  |    | ||  | |    ||||| | ||   || || |    ||    |  ||                                                                                   
AGTCCATCAAGATTTTCCTTGAAGATGGTCATCTAATTGGCATTGCCCAATCGTATGCAAAAAACATGGGACTCTATGGCCAGAGAGTGGGATGCCTAAGgtagttgtc-----------agtatacgatctttgcactgattg--tgagattttttccatctgtcttttcaagtctt---attttcagaagggggcttctta-tgtttctatttta----------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163981579|gb|ES125183.1|ES125183
EST:     TCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAG                         TGTGCTTTGTGAAGATCCG
genomic: TCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAGgtattcattt ... tctactgcagTGTGCTTTGTGAAGATCCG
EST: gi|86044680|gb|DR340435.1|DR340435
EST:     TCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAG                         TGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCA
genomic: TCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAGgtattcattt ... tctactgcagTGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCA
EST: gi|124860496|gb|EH944933.1|EH944933
EST:     TCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAG                         TGTGCTTTGTGAAGATCCGAAGCAAGCCGTGG
genomic: TCCTATGCAAAAAACATGGGACTCTACGGCCAGAGGGTGGGATGTCTCAGgtattcattt ... tctactgcagTGTGCTTTGTGAAGATCCGAAGCAAGCCGTGG
EST: gi|125098639|gb|EL154707.1|EL154707
EST:     GGGACTCTACGGCCAGTAGGGTGGGATGTCTCAG                         TGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCA
genomic: GGGACTCTACGGCCAG-AGGGTGGGATGTCTCAGgtattcattt ... tctactgcagTGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCA
EST: gi|86079557|gb|DR375314.1|DR375314
EST:     GGATGTCTCAG                         TGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCA
genomic: GGATGTCTCAGgtattcattt ... tctactgcagTGTGCTTTGTGAAGATCCGAAGCAAGCCGTGGCTGTGAAAAGTCAATTGCA