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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaaaaatagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G28760.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g16980.3 (Oryza sativa), 5'ss of exon 8
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaaaaatagccgagtaattttgagtcgaatcctagac-taattctaaagcctttttgtttgataaaattgttttgggtttgcag
|||| || || || ||||| |||||||| ||||| ||| | ||||||||||||||||| || ||||| || |||||||||||||||||  |  ||| |  ||        | || |||||    | | | || | |    || | | |      |  | | |        | |||   | |   | || ||||| || ||                                   
AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACGgtaatgctcgc-----tgaacttctt----tcaacattctctcaggttgtgtcc------agttggtc-------ctggagcttattttcatacataattttacag-----------------------------------

upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g16980.5 (Oryza sativa), 5'ss of exon 9
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaaaaatagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag
|||| || || || ||||| |||||||| ||||| ||| | ||||||||||||||||| || ||||| || |||||||||||||||||  |  ||| |  ||   ||  |     |||   | | | ||   || | |    ||  || || |    ||      ||                                                                   
AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTgttagtaacttcattgctcaggccgtacggtaatgctcg-ctgaacttctttcaacattctctcaggttgtgtccagttggtcctggagct-tattttcata-------------------------------------------------------------------

upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaa-aaatagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag
| || || || || ||||| |||||||| ||||| ||| | |||||||||||||||||||| ||||| ||||||||||||||||||||| |  ||| |  ||             || |||||| | | || |||| |  |    | ||  | | | || | ||  |||| ||    | |    |||                                                
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgct-------------ttgttgaatgtcttttattttctcctcagctactgcagatagattggcggctaatcttttcacaatctttag------------------------------------------------

upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 8
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaa-aaatagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag
| || || || || ||||| |||||||| ||||| ||| | ||||||||||||||||| || ||||| ||||||||||||||||||||| |  ||| |  ||             || |||||| | | || |||| |  |    | ||  | | | || | ||  |||| ||    | |    |||                                                
AAATCCGGATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgct-------------ttgttgaatgtcttttattttctcctcagctactgcagatagattggcggctaatcttttcacaatctttag------------------------------------------------

upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G300412_T01 (Zea mays), 5'ss of exon 15
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaaaa-atagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag
| || || || || ||||| |||||||| ||||| ||| | ||||||||||||||||| || ||||| ||||||||||||||||||||| |  ||| |  ||             || |||||| | | || |||| |  |    | ||  | | | || | ||  |||| ||    | |    |||                                                
AAATCCGGATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgct-------------ttgttgaatgtcttttattttctcctcagctactgcagatatattggcggctaatcttttcacaatctttag------------------------------------------------

upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G177373_T02 (Zea mays), 5'ss of exon 9
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaaaa-atagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag
| || || || || ||||| || ||||| ||||| ||| | ||||||||||||||||| || ||||| ||||||||||||||||||||| |  ||| |  ||             || |||||| ||| || |||| | ||    | ||  | | | || | ||  |||| ||    | |    |||                                                
AAATCCGGATTGCCAGGATTTTTAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgct-------------ttgttgaatgtattttattttctcttgagctactgcagatatattggcggctaatcttttcacaatctttag------------------------------------------------

upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G382038_T01 (Zea mays), 5'ss of exon 10
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTC-GTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaaaa-atagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag
| || || || || ||||| || ||||| ||||| |||  | ||||||||||||||||| || ||||| ||||||||||||||||||||| |  ||| |  ||             || |||||| ||| || |||| | ||    | ||  | | | || | ||  |||| ||    | |    |||                                                
AAATCCGGATTGCCAGGATTTTTAACACCTATGGGCCTAAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgct-------------ttgttgaatgtattttattttctcttgagctactgcagatatattggcggctaatcttttcacaatctttag------------------------------------------------

upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 9
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaaaaatagccgagtaat-tttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag
| || || || || ||||| |||||||| ||||| ||  | ||||||||||| ||||| || ||||| ||||||||||||||||||||| |  ||| |  ||        |  | ||||| | |||        ||      || | |  || |   | |  |  |||| |||   |    |  |||                                                
AAATCCGAATTGCCAGGATTTTCAACACCTATGGACCAAGGATGAACATTGACGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgct------tgttgaattctttagttt-------cttcccagcttctgccagatagttttggtggctaatattttcatgatcttgtag------------------------------------------------

upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 9
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaac--taatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaaaaatagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag
| |||||||| ||||| || |||||||||||||| || || ||||| ||||||||||| || ||||| || |||||||||||||| ||  |  ||| || |  | | ||  || | ||| | |     ||   | |  |  |   |  | ||  || | |       | || |  | ||  |    | | | || |                                        
AAATACGCATTGCGAGAATCTTCAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGTAACTTCATTGCTCAAGCAATTCGgtaaatcctttaacttaataatgttataggcaagatggatatgctgataaatagttttttaagact--ttatattatctcaactctcaagaaacattgatgc----------------------------------------

upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 10
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtga--aactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaaaaatagccgagtaattttgag---tcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag
| |||||||| || || || || ||||||||||| || || ||||| ||||||||||| || ||||| ||||||||||||||||| || ||  ||| |  |  | |     |||  ||| |  |||  ||  | |  | || ||  ||   || | |  ||      || | |   |   | || | | |||   ||                                          
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTTAGCAACTTCATTGCTCAAGCACTTCGgtaattacttgactgttatctggtttt--aatgcatgctataatgttgttacttc--tgtatatctattttgatattctgatggttttgattgccagaaggatc-----------------------------------------

upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtga--aactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaaaaatagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag
| |||||||| || || || || ||||||||||| || || ||||| ||||||||||| || ||||| ||||||||||||||||| || ||  ||| |  |  | |     |||  |||  | |||  ||  | |  | || ||  ||           |     |   ||| |||      |  | |  |  |   || |                                   
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactttactgttatctggtt--taaatgcatgctataatgttgttacttctgcatgtcttttttatatatattctgat---ggttttgg--ttgtcagaagg-----------------------------------

upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 9
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaaaaatagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag
| |||||  | || || || || ||||||||||| || || ||||| ||||||||||| || ||||| ||||||||||||||||| ||  |  ||| |    |   |   |||  || | |  | |||  | |  | |  | || ||  |       | |     |   ||   |  |  |  | || |    |                                        
AAATACGTGTTGCAAGAATCTTTAACACATATGGGCCGCGCATGAATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCGgtaattaaagcatttttcagtttgtagtttatatgctgtactgtagtgttatttctacgtgccttgtttgatctgttaatgatggttttt-gattgccaca---------------------------------------

upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 9
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaaaaatagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag
| |||||  | || || || || ||||||||||| || || ||||| ||||||||||| || ||||| ||||||||||||||||| ||  |  ||| |    ||  |   |||  || | |  | ||| || |  | |  | || ||  |       | |     |   ||   |  |  |  | || |  | |                                        
AAATACGTGTTGCAAGAATCTTTAACACATATGGGCCACGCATGAATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCGATTCGgtaattaaaacatttttcagtttgtagtttatatgttgtactgtagtgttatttctatgtgccttgtttgatctgttaatgatggttttt-gattgctgca---------------------------------------

upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 8
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaaaaatagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag
| |||||||| ||||| || || ||||||||||| || || ||||| ||||||||||| || ||||| || |||||||| ||||| ||  |  ||| |        ||| | || ||  | |  ||||        |   | |  |      | |||||         |||| || |      ||    || ||| |||     ||| |  |                      
AAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGTAACTTCATCGCTCAAGCAATTCGgtaa-------ttcctttaactttataatgttataggcaagatggatatgct-----gataaataatt------ttttaagactttatatatctcaactctcaagaaacattgatgta----------------------

upper sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtgaaactaatctccatcaagttcttga--atttatcttttttttttttttttttcttgaaaaaatagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag
| |||||||| || || || |||||||||||||| || || ||||| ||||||||||| || ||||| ||||| ||||| ||||| || ||  |||        ||   ||  ||| |||     || ||| | ||| |    |  | | || |   |||           ||||  |    ||| |||  |  || |  |   |                               
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgta-----tgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatcat------gctttgtttaatttccaagatgacatccactgaact-------------------------------