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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTAGGTTTCCTTACCCCTTGCAATGGGGTGTACCGTTATTCAACTGGAAAATGGCTTTTGTTATGTGTGTGGTCTCCGTAATTGCTTCAGTAGATTCGgttagtgtttcctatcatctttgattaaaccatcaaaattatgtgttggaagtcaaacttttgcacttttactaatcagtttacggtacggtatgcatatatggtaattttttattttactgtcag

Basic information

species Arabidopsis thaliana
transcript AT2G27810.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G27810.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G09060.1 (Glycine max), 5'ss of exon 7
GTTTAGGTTTCCTTACCCCTTGCAATGGGGTGTACCGTTATTCAACTGGAAAATGGCTTTTGTTATGTGTGTGGTCTCCGTAATTGCTTCAGTAGATTCGgttagtgtttcctatcatctttgattaaaccatcaaaattatgtgttggaagtcaaacttttgcacttttact-aatcagtttacggtacggtatgcatatatggtaattttttattttactgtcag
||||||||||||||| ||  | |||||||||   ||  | ||| |||||||||||||| |||| ||||||||||| ||| ||||  | || || |||||||||||| |||  ||   ||| || ||         |  |   || ||  |  |  |   |    |   | | |  |   | ||  | ||   || | | |  |                        
GTTTAGGTTTCCTTATCCACTACAATGGGGTACTCCTGTCTTCCACTGGAAAATGGCTATTGTGATGTGTGTGGTTTCCTTAATCTCATCTGTGGATTCGgttagt-ttttttactttctctgttttggttcctgagct---gtattttatcttgagtctgaatatgatcatttgacttgcttgtgttattttaggaaaaacta-----------------------

upper sequence: AT2G27810.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 7
GTTTAGGTTTCCTTACCCCTTGCAATGGGGTGTACCGTTATTCAACTGGAAAATGGCTTTTGTTATGTGTGTGGTCTCCGTAATTGCTTCAGTAGATTCGgttagtgt-ttcctatcatctttgattaaaccatcaaaattatgtgttggaagtcaaacttttgcacttttactaatcagtttacggtacggtatgcatatatggtaattttttattttactgtcag
||||||||||||||| || || |||||||||  |||  | ||| |||||||||||||  |||| ||||||||||| || |||||  | ||||| || || || ||| |  | | ||    | |  |||| |  |  ||  |   | |           ||| |    |||    ||     ||||       ||   |||| ||  |  || |              
GTTTAGGTTTCCTTATCCATTACAATGGGGTACACCTGTCTTCCACTGGAAAATGGCCATTGTCATGTGTGTGGTTTCTGTAATCTCATCAGTGGACTCAgtaagtttgcttccatttgttatatttaatctcttgaatgttcatat-----------cttatttgatttactgaaatgagttacaaattatta--gatatttgaaaggttgt--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124803271|gb|EH891700.1|EH891700
EST:     AAATGGCTTTTGTTATGTGTGTGGTCTCCGTAATTGCTTCAGTAGATTCG                         GTTGGTTCGTACCATGCTTCTTCT
genomic: AAATGGCTTTTGTTATGTGTGTGGTCTCCGTAATTGCTTCAGTAGATTCGgttagtgttt ... ttactgtcagGTTGGTTCGTACCATGCTTCTTCT
EST: gi|124861024|gb|EH945461.1|EH945461
EST:     AAATGGCTTTTGTTATGTGTGTGGTCTCCGTAATTGCTTCAGTAGATTCG                         GTTGGTTCGTACCATGCTTCTTCTCTATTAG
genomic: AAATGGCTTTTGTTATGTGTGTGGTCTCCGTAATTGCTTCAGTAGATTCGgttagtgttt ... ttactgtcagGTTGGTTCGTACCATGCTTCTTCTCTATTAG