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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATACATGCCAGAATTAGCTGCCCTTTTCCCTCATATACTCGTCGATGTCAGTAGCGTCAAGGCTTTATGCGCCCGATGGTTCCCCATAGgtaacgataaatactgtaaaactgcatgctatcaatgaggaaaatacttaataagcataatttggatttgttttgtgggggtgaatacag

Basic information

species Arabidopsis thaliana
transcript AT2G26970.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164227314|gb|ES160712.1|ES160712
EST:     GATGGTTCCCCATAG                         AGAGAAGGAAAGCTCCTGCCAAG-AAAACAATCACAGAGCCATGGATGATA
genomic: GATGGTTCCCCATAGgtaacgataa ... gtgaatacagAGAGAAGGAAAGCTCCTGCCAAGAAAAACAATCACAGAGCCATGGATGATA
EST: gi|124953321|gb|EL028523.1|EL028523
EST:     CGTCGATGTCAGTAGCGTCAAGGCTTTATGCGCCCGATGGTTCCCCATAG                         AGAGAAGGAAAGCTCCTGCCAAG
genomic: CGTCGATGTCAGTAGCGTCAAGGCTTTATGCGCCCGATGGTTCCCCATAGgtaacgataa ... gtgaatacagAGAGAAGGAAAGCTCCTGCCAAG
EST: gi|164171008|gb|ES122012.1|ES122012
EST:     GATGGTTCCCCATAG                         AGAGAAGGAAAGCTCCTGCCAAGAAAAACAATCACAGAGCCATGGATGATA
genomic: GATGGTTCCCCATAGgtaacgataa ... gtgaatacagAGAGAAGGAAAGCTCCTGCCAAGAAAAACAATCACAGAGCCATGGATGATA