1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTATGGCATCTTGCAGTTCGTGGTGCTTTGTACTGTCGGTGTCTCTGCTGCATGAATGATGCTGATTTTGCTGATTGGCCAACCGTTCCTCCAATTCCAGgtttgtgcttacattaaaaatgtagttcatgacagaatgaggttactctcagcagtggtgaagatatataaaattatttccttcattcttttataatctg...
species | Arabidopsis thaliana |
transcript | AT2G25910.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGCTGATTGGCCAACCGTTCCTCCAATTCCNG ATAACCTGAAGTCAGAAGATCAATGTCTTGAAGAAGAGATCCTGTCAGTGCEST: gi|124937814|gb|EL014516.1|EL014516
genomic: TGCTGATTGGCCAACCGTTCCTCCAATTCCAGgtttgtgctt ... aatgtggcagATAACCTGAAGTCAGAAGATCAATGTCTTGAAGAAGAGATCCTGTCAGTGC
EST: CTGATTGGCCAACCGTTCCTCCAATTCCAG ATAACCTGAAGTCAGAAGATCAATGTCTTGAAGAAGAGATCCTAGTCAGTGEST: gi|86035179|gb|DR330932.1|DR330932
genomic: CTGATTGGCCAACCGTTCCTCCAATTCCAGgtttgtgctt ... aatgtggcagATAACCTGAAGTCAGAAGATCAATGTCTTGAAGAAGAGATCCT-GTCAGTG
EST: CATGAATGATGCTGATTTTGCTGATTGGCCAACCGTTCCTCCAATTCCAG ATAACCTGAAGTCAGAAGATCAATGTCTTGAAGAAGAGATCCTGTCAGTGC
genomic: CATGAATGATGCTGATTTTGCTGATTGGCCAACCGTTCCTCCAATTCCAGgtttgtgctt ... aatgtggcagATAACCTGAAGTCAGAAGATCAATGTCTTGAAGAAGAGATCCTGTCAGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATGGCATCTTGCAGTTCGTGGTGCTTTGTACTGTCGGTGTCTCTGCTGCATGAATGATGCTGATTTTGCTGATTGGCCAACCGTTCCTCCAATTCCAGgtttgtgcttacattaaaaatgtagttcatgacagaatgaggttactctcagcagtggtgaagatatataaaattatttccttcattcttttataatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT