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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTAGCCAAGAAAGTGAAGTTCTTCTTTAGTGCTGCTGTTCAAAACTGGGATGCAGAGTTTTACATCAAAGTTGATGACAATATTGACTTAGATCTTGgtaaagacttcctcttttatttcctatctgtaaagttatgtttggtcctaccctgcatcagcaatttatgttaaattatcttgggttcaatctcacatcaccaattctatttgtgtgattcaaactgatag

Basic information

species Arabidopsis thaliana
transcript AT2G25300.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25300.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 7
GAGCTAGCCAAGAAAGTGAAGTTCTTCTTTAGTGCTGCTGTTCAAAACTGGGATGCAGAGTTTTACATCAAAGTTGATGACAATATTGACTTAGATCTTGgtaaagacttcctcttttatttcctatctgtaaagttatgtttggtcctaccctgcatcagcaatttatgttaaattatcttgggttcaatctcacatcaccaattctatttgtgtgattcaaactgatag
||| |  | |||||||  ||||| ||||| ||| | ||  ||||||| ||||||||||| |||||  | |||||||||||||| || ||| | ||||||||||  |  ||  | ||||  |   | | |  | | |  |  ||  |  ||  ||| ||   |  |   |  || || || | |        ||  | |      |  ||                      
GAGTTGCCTAAGAAAGCAAAGTTGTTCTTCAGTACAGCGCTTCAAAATTGGGATGCAGAATTTTATGTGAAAGTTGATGACAAGATAGACCTTGATCTTGgtaggg--tttttgttttgatctatttataaagaatattagttcttggtattctgtatt--ctttccttagtagatgatgtagatcatttgctttcttttatggtgttacag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163973553|gb|ES040145.1|ES040145
EST:     GGATGCAGAGTTTTACATCAAAGTTGATGACAATATTGACTTAGATCTTG                         AGGGGTTGATTGGCCTTCTTGAAAGTCGGCGTGG
genomic: GGATGCAGAGTTTTACATCAAAGTTGATGACAATATTGACTTAGATCTTGgtaaagactt ... aaactgatagAGGGGTTGATTGGCCTTCTTGAAAGTCGGCGTGG