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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAGAAGCCTTGGAGTTGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGgtaagcacattctgaaaccgaaccattttcttggtcccattattgaaacactgaacccatttctttatgcatttcttctcaaatattcttctctcatttccatcttgatcttcag

Basic information

species Arabidopsis thaliana
transcript AT2G24765.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G24765.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os08g15040.2 (Oryza sativa), 5'ss of exon 7
TTACAGAAGCCTTGGAGTTGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGgtaag-cacattctgaaaccgaaccattttcttggtcccattattgaaacactgaacccatttctttatgcatttcttctcaaatattcttctctcatttccatcttgatcttcag
| || ||| | || ||  | || ||||| ||||| ||||||||||| || |||||||| | |||  | ||||| ||||| ||||| || || ||||||||||||| |||||   ||||        ||||||       |  | ||||| | ||  |  |  | |||||||   |    ||   || | | || |  ||    |  |||       
TAACGGAATCATTAGAACTCCACAAGATTAAGAGCCGTCAATGGGCGATTTTCAAAACATCTGCCATAAAAGGAGAGGGCCTTTTTGAAGGTTTGGACTGgtaagtcacat---gaaatt---ttcttttctctacggaacaaatgaaataatgg-ctaaaatgtttatgctggtaaaatcctgtactatcctgt--ttcttgtagtga-------

upper sequence: AT2G24765.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv11s0052g01720.t01 (Vitis vinifera), 5'ss of exon 8
TTACAGAAGCCTTGGAGTTGCATAAGATAAAGAGTCGTCAATGGGCAATCTTCAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGgtaagc--acattctgaaaccgaaccattttcttggtcccattattgaaacactgaacccatttctttatgcatttcttctcaaatattcttctctcatttccatcttgatcttcag
| || || ||||| |||||||| ||||| || |  |||||||||||||| || ||||||| |||  | ||||| || || || || ||||| |||||||||||||   ||| | | ||    || ||| ||  || |    | ||      ||    |   | |  ||    ||||    |       |  |    |||||                
TGACTGAGGCCTTAGAGTTGCACAAGATTAAAAACCGTCAATGGGCAATTTTTAAAACTTCTGCCATAAAAGGGGAAGGTCTCTTTGAGGGCTTGGACTGgtaagtcaacacttttaatgataaacatgttagtg-ttggttaataaggttaccaggcatctgtgctttcagattttgagttgctctattgttcaccattt----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164084858|gb|ES066035.1|ES066035
EST:     ACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTG                         GTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
genomic: ACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGgtaagcacat ... tgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
EST: gi|164056138|gb|ES049219.1|ES049219
EST:     TTCAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTG                         GTTGAGTAATACATTGAAGTCGGGAAGTGG
genomic: TTCAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGgtaagcacat ... tgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGG
EST: gi|125142669|gb|EL179823.1|EL179823
EST:     GGGACTTTTCGAGGGATTGGACTG                         GTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
genomic: GGGACTTTTCGAGGGATTGGACTGgtaagcacat ... tgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
EST: gi|125218744|gb|EL232827.1|EL232827
EST:     CAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTG                         GTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
genomic: CAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGgtaagcacat ... tgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
EST: gi|164165575|gb|ES191934.1|ES191934
EST:     TCGAGGGATTGGACTG                         GTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
genomic: TCGAGGGATTGGACTGgtaagcacat ... tgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCATACACC
EST: gi|125204230|gb|EL219184.1|EL219184
EST:     ACTTTTCGAGGGATTGGACTG                         GTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCA
genomic: ACTTTTCGAGGGATTGGACTGgtaagcacat ... tgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGGCTAAAATCATCGTCA
EST: gi|19877752|gb|AU238583.1|AU238583
EST:     TTCAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTG                         GTTGAGTAATACATTGAAGTCGGGAAGTGGCT
genomic: TTCAAAACTTGTGCTGTGAAAGGCGAGGGACTTTTCGAGGGATTGGACTGgtaagcacat ... tgatcttcagGTTGAGTAATACATTGAAGTCGGGAAGTGGCT