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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTGGCACAGATGAACTCAACGCCTACCTAAACAAATACCGTATAGAGTTGGACCCTAATCTAACATCCCTCGTGGGCAGgtaatccggtttaaaaagttatgaaaaactctaaaaactccagttttgcgccttatcatttcagaacattaaattatgcactcttgattttatatag

Basic information

species Arabidopsis thaliana
transcript AT2G23070.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088019|gb|DR383778.1|DR383778
EST:     AACAAATACCGTATAGAGTTGGACCCTAATCTAACATCCCTCGTGGGCAG                         ACATAGCCGGAAGCCATGGACAAAGTTCATCAATTCTGAAAACCAGCACTT
genomic: AACAAATACCGTATAGAGTTGGACCCTAATCTAACATCCCTCGTGGGCAGgtaatccggt ... ttttatatagACATAGCCGGAAGCCATGGACAAAGTTCATCAATTCTGAAAACCAGCACTT
EST: gi|125131625|gb|EL174149.1|EL174149
EST:     ACAAATACCGTATAGAGTTGGACCCTAATCTAACATACCCTCGTGGGCAG                         ACATAGCCGGAAGCCA
genomic: ACAAATACCGTATAGAGTTGGACCCTAATCTAACAT-CCCTCGTGGGCAGgtaatccggt ... ttttatatagACATAGCCGGAAGCCA
EST: gi|47831931|gb|CK121615.1|CK121615
EST:     AACAAATACCGTATAGAGTTGGACCCTAATCTAACATCCCTCGTGGGCAG                         ACATAGCCGGAAGCCATGGACAAAGTTCATCAATTCTGAAAAC-AGNAACT
genomic: AACAAATACCGTATAGAGTTGGACCCTAATCTAACATCCCTCGTGGGCAGgtaatccggt ... ttttatatagACATAGCCGGAAGCCATGGACAAAGTTCATCAATTCTGAAAACCAGCA-CT
EST: gi|124873435|gb|EH955080.1|EH955080
EST:     AACAAATACCGTATAGAGTTGGACCCTAATCTAACATCCCTCGTGGGCAG                         ACATAGCCGGAAGCCATGGACAAAGTTCATCAATTCTGAAAACCA
genomic: AACAAATACCGTATAGAGTTGGACCCTAATCTAACATCCCTCGTGGGCAGgtaatccggt ... ttttatatagACATAGCCGGAAGCCATGGACAAAGTTCATCAATTCTGAAAACCA