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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTCTGTATCACAGAAAGTTCCTGAAGATGGTTGGACTATGCAAGATGGAACTCCTTGGCCTGGAAACAATGTCCGGGACCATCCAGGAATGATTCAGgtaatgataatgtgattatgatgattcctcatatgtcatagaactgaagcttaataagagattttttacaatggaag

Basic information

species Arabidopsis thaliana
transcript AT2G21770.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G21770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G32100.1 (Glycine max), 5'ss of exon 8
GGTTTCTGTATCACAGAAAGTTCCTGAAGATGGTTGGACTATGCAAGATGGAACTCCTTGGCCTGGAAACAATGTCCGGGACCATCCAGGAATGATTCAGgtaatgata-atgtgattatgatga------------ttcctcatatgtcatagaactgaa-gcttaataagagattttttacaatggaag---------
|||  |   | |||| || |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||||  |||| ||||| || |||||||||||||  | | || | | | | |  |             |  |   || | |||    ||      | ||    ||||||  | | |    |         
GGTGGCAACAGCACAAAAGGTTCCTGAGGATGGATGGACCATGCAAGATGGGACTCCTTGGCCTGGAAATAATGTGAGGGATCATCCTGGCATGATTCAGgtaagaagatatatcagtttaacaaacatcgaaaatagtgtttgcatatgatattgttgggcatctcatggatgattttgaaaactttttgccctttatt

upper sequence: AT2G21770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G15380.1 (Glycine max), 5'ss of exon 8
GGTTTCTGTATCACAGAAAGTTCCTGAAGATGGTTGGACTATGCAAGATGGAACTCCTTGGCCTGGAAACAATGTCCGGGACCATCCAGGAATGATTCAGgtaatgata-atgtgattatgat-gattcctcatatgtcatagaactgaagcttaataagagattttttacaatggaag---------------------
|||  |   | |||| || |||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||||  |||| ||||| || |||||||||||||  |   || | | | | |  ||  ||  | ||    |     |      |  | ||   | |  |   |||                         
GGTGGCAACAGCACAAAAGGTTCCTGAGGATGGATGGACCATGCAAGATGGGACTCCTTGGCCTGGAAATAATGTGAGGGATCATCCTGGCATGATTCAGgtaagaaggcatatcagtttaacagacaccaaaaatagtgtttgcatatgatgttgtcaggcttctcatgagatgattttgaaaacatttttcccccttt

upper sequence: AT2G21770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv07s0031g02060.t01 (Vitis vinifera), 5'ss of exon 8
GGTTTCTGTATCACAGAAAGTTCCTGAAGATGGTTGGACTATGCAAGATGGAACTCCTTGGCCTGGAAACAATGTCCGGGACCATCCAGGAATGATTCAGgtaatga------------taatgtgattatgatgattcctcatatgtcatagaactgaagcttaat--aagagattttttacaatggaag---------
 |||||  |  |||| || |||||||| || || ||||| ||||| ||||||||||| ||||||||||||||||| ||  | ||||| ||  |||| ||||| ||||            |  ||  |  |   |  |  ||    |||||  ||||        |||  || || || | |  |||| |           
AGTTTCCATGGCACAAAAGGTTCCTGAGGAAGGCTGGACAATGCAGGATGGAACTCCATGGCCTGGAAACAATGTTCGCAATCATCCTGGCCTGATCCAGgtgatgacttatctttccattttgcaagaactgtcttctcttggttgtcacggaaccttgttggaattgaataggttctgttaaatgtatcatgaatgtg