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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGTTGCCTGAGTTCTTGGGAGGTGCATGTACTTGCGCAGATCAAGGCGGTTGCATGCTTTCTGACAAGGGACCTTGGAAAAACCCGGAAATTGTGAAGgtcatttacttagactaatctctttttggattctatttgtatcatccaagttggaatctgagacatttggttttcttctcattatttcag

Basic information

species Arabidopsis thaliana
transcript AT2G21520.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124927359|gb|EL005103.1|EL005103
EST:     TGGAAAAACCCGGAAATTGTGAAG                         ATGGTGCTTCATGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAGTGTTG
genomic: TGGAAAAACCCGGAAATTGTGAAGgtcatttact ... attatttcagATGGTGCTTCATGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAGTGTTG
EST: gi|86064746|gb|DR360503.1|DR360503
EST:     GTTGCATGCTTTCTGACAAGGGACCTTGGAAAAACCCGGAAATTGTGAAG                         ATGGTGCTTCATGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAGTGTTG
genomic: GTTGCATGCTTTCTGACAAGGGACCTTGGAAAAACCCGGAAATTGTGAAGgtcatttact ... attatttcagATGGTGCTTCATGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAGTGTTG