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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTATTCAAACTGGGTATCCTCTAGACTTGCCGTCTGGGACTCTTGGGAGTTATTGCATCTATGAGTACCACATGgtacggtagatataatcactggttacttttatcaagttgttaggttgtttataattgtagcatatcgtaatttgagctaatatttggcatgttcactttccag

Basic information

species Arabidopsis thaliana
transcript AT2G19880.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19880.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G061419_T01 (Zea mays), 5'ss of exon 7
ATATTTATTCAAACTGGGTATCCTCTAGACTTGCCGTCTGGGACTCTTGGGAGTTATTGCATCTATGAGTACCACATGgtacggtagatataatcactggttacttttatcaagttgttaggttgtttataattgtagcatatcgtaatttgagctaatatttggcatgttcactt-tccag--
|||||||| |||||||| ||||| || ||||| || ||||| | | | || || |||||||| ||||| |||||||||||| |  || |||  | | | |   | |  || |   ||   |  ||  | |  ||  |  | ||   || || | |||  |  |    ||| || || | ||   
ATATTTATACAAACTGGATATCCCCTTGACTTACCTTCTGGCAGTTTGGGCAGCTATTGCATATATGAATACCACATGgtatga-agttatt-taattagaaccatacatta---tgggtgtctgcctgttctttcattaaat-acaagttaatctagaacataatgtgtgcagttattcaata

upper sequence: AT2G19880.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA16G08510.1 (Glycine max), 5'ss of exon 6
ATATTTATTCAAACTGGGTATCCTCTAGACTTGCCGTCTGGGACTCTTGGGAGTTATTGCATCTATGAGTACCACATGgtacggtagatataatc--actggttacttttatcaagttgttaggttgtttataattgtagcatatcgtaatttgagctaatatttggcatgttcactttccag
|||||||||||||| || || ||||| || ||||| ||||| | ||| |||||||| ||||||||||| ||||| |||||||   |  ||   |   | |  |  || |||  |  |        ||| |    || ||  | || ||  |||   ||    |||| |||           | 
ATATTTATTCAAACCGGATACCCTCTTGATTTGCCTTCTGGAAGTCTAGGGAGTTACTGCATCTATGAATACCATATGgtaca-caactacctttggatttatatctcttaatatctgtagcaaatgtctgggtttatataacattgtgttttattctg---tttgccataaatgaagctta-

upper sequence: AT2G19880.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G01130.1 (Glycine max), 5'ss of exon 6
ATATTTATTCAAACTGGGTATCCTCTAGACTTGCCGTCTGGGACTCTTGGGAGTTATTGCATCTATGAGTACCACATGgtacggtagatataatcactggttacttttatcaagttgttaggttgtttataattgtagcatatcgtaatttgagctaatatttggcatgttcactttccag
|||||||||||||| || || ||||| || ||||| ||||| | ||| |||||||| ||||||||||| ||||| |||||||   | |     |   |   ||| | ||  |  |        ||| |    |   |  |  | ||  |||   ||| | |    |    |||   |    
ATATTTATTCAAACCGGATACCCTCTTGATTTGCCATCTGGAAGTCTAGGGAGTTACTGCATCTATGAATACCATATGgtacacaaaaacctttggatttatacgtctaatatctgcagcaaatgtctgggttcccataacgttgtgttttcttctattttccacctgtctcatactt---

upper sequence: AT2G19880.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G35860.1 (Glycine max), 5'ss of exon 6
ATATTTATTCAAACTGGGTATCCTCTAGACTTGCCGTCTGGGACTCTTGGGAGTTATTGCATCTATGAGTACCACATGgtacggtagatataatcactggttactt-ttatcaagttgttaggttgtttataattgtagcatatcgtaatttgagctaatatttggcatgttcactttccag--
||||||||||||||||| || ||||| ||  |||| ||||| |  || || ||||| ||||||||||| ||||| |||||||  |   |    | | |    | || |||| || |   ||       || || || | | |||| |||||  |  | |  ||     |    | ||   ||  
ATATTTATTCAAACTGGATACCCTCTTGATCTGCCATCTGGAAGCCTGGGAAGTTACTGCATCTATGAATACCATATGgtacactt--ttctgttattttccatttgttataaaatatataaa--acctacaaatgaaacttatc-taattgaattttac-ttaaatttcagaagttgttagat

upper sequence: AT2G19880.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G03760.1 (Glycine max), 5'ss of exon 7
ATATTTATTCAAACTGGGTATCCTCTAGACTTGCCGTCTGGGACTCTTGGGAGTTATTGCATCTATGAGTACCACATGgtacggtaga-tataatcactggttacttttatcaagttgttaggttgtttataattgtagcatatcgtaatttgagctaatatttggc--atgttcactttccag
||||||||||||||||| || ||||| ||  |||| ||||| |  || || ||||| ||||||||||| ||||| |||||||  |    | | ||     |||  | |||| || |   ||       || || || | | || | ||||   |  | |  |||     |  ||||   |  | 
ATATTTATTCAAACTGGATACCCTCTCGATCTGCCATCTGGAAGCCTGGGAAGTTACTGCATCTATGAATACCATATGgtacacttttctgttattttccgtt--tgttataaaatatataaa--acctacaaatgaaacttagc-taatgctaattgaattttacttaaatttcagaattta-