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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTGGATAACTACTGTCGCCGCTGCAATTGATGATCGAAGATACAAAAATCATCTGACCCTTGGGAATGGAAAAATGCTTGCAGGGATGGGCTTATCTCgtaagtaaaaagaatgttattttacatttggcatgaccgatacgagtttatattttcatgtttttgatgaattgttacgtattttctgcag

Basic information

species Arabidopsis thaliana
transcript AT2G19170.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19170.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA13G00580.1 (Glycine max), 5'ss of exon 6
CCCTGGATAACTACTGTCGCCGCTGCAATTGATGATCGAAGATACAAAAATCATCTGACCCTTGGGAATGGAAAAATGCTTGCAGGGATGGGCTTATCTCgtaagt-----aaa----aagaatgttattttacatttggcatgaccgata-cgagtttatattttcatgtttttgatgaattgttacgtattttctgcag
|| |||||| |  |||| || ||||||||||||||||| ||||| ||||||||| ||| |||||| ||||||||||   | || || || || ||||| ||| |||     ||      |  || ||  || | || |    |      ||  |  ||   |||   |  |    |||  | |||    ||||||    | 
CCATGGATAGCATCTGTAGCAGCTGCAATTGATGATCGTAGATATAAAAATCATTTGATCCTTGGAAATGGAAAAACCTTAGCTGGAATTGGGTTATCACgtgagttttccaacttctgactatatttcttcagatatattgttttttttaatggattggcattgagacttgggagatataatgtggaatattttggaaa-

upper sequence: AT2G19170.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA17G06740.1 (Glycine max), 5'ss of exon 6
CCCTGGATAACTACTGTCGCCGCTGCAATTGATGATCGAAGATACAAAAATCATCTGACCCTTGGGAATGGAAAAATGCTTGCAGGGATGGGCTTATCTCgtaagtaaaaagaatgttat-----tttacatttggcatgaccgatacgagtttatattttcatgtttttgatgaattgttacgtattttctgcag----
|| |||||| |  |||| || ||||||||||||||||| ||||| ||||||||| ||| |||||| ||||||||||   | ||||| || || ||||| ||| |||      | | ||       ||| | |  |  || |  |  | |  ||    ||   |  |    |||  | |||    ||||||          
CCATGGATAGCATCTGTAGCAGCTGCAATTGATGATCGTAGATATAAAAATCATTTGATCCTTGGAAATGGAAAAACCTTAGCAGGAATTGGGTTATCACgtgagttttccaacttttgactatattttcttcagatataattgtaatggattgccgttgagacttgggagatataatgtggaatattttggatgaaatt

upper sequence: AT2G19170.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA15G17830.1 (Glycine max), 5'ss of exon 6
CCCTGGATAACTACTGTCGCCGCTGCAATTGATGATCGAAGATACAAAAATCATCTGACCCTTGGGAATGGAAAAATGCTTGCAGGGATGGGCTTATCTCgtaagtaaaaagaatgtta-ttttacat-ttggcatgaccgatacgagtttatattttcatgttttt-gatgaattgtt-acgtattttctgcag-----
|| |||||| | ||||| || || |||||||||||||| ||||| ||||| ||||||| ||| || |||||||||||  | || ||  | || || || ||| |||      | |   |  | |   | || | ||      | |    | ||    |      |   ||| || || | | |  | |  || |      
CCATGGATAGCAACTGTAGCAGCAGCAATTGATGATCGTAGATATAAAAACCATCTGATCCTCGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCACgtgagttttccaacttccaactatgtttattaggatatgttgttcttaatcatgcactgggacatggagataaaatgctgatgattatggtggaaatcta

upper sequence: AT2G19170.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA09G06640.1 (Glycine max), 5'ss of exon 7
CCCTGGATAACTACTGTCGCCGCTGCAATTGATGATCGAAGATACAAAAATCATCTGACCCTTGGGAATGGAAAAATGCTTGCAGGGATGGGCTTATCTCgtaagtaaaaagaatgttattttacatttggcatgaccgatacgagtttatattttcatgttttt----gatgaattgtt-acgtattttctgcag-----
|| |||||| | ||||| || || |||||||||||||| ||||| ||||| ||| ||| |||||| |||||||||||  | || ||  | || || || ||| |||      | | |  |  || ||||   | ||   |     ||| ||  |    || |  |    ||| || || | | |  | |  || |      
CCATGGATAGCAACTGTAGCAGCAGCAATTGATGATCGTAGATATAAAAACCATTTGATCCTTGGAAATGGAAAAATCTTAGCCGGACTTGGATTGTCACgtgagttttccaact-tcctactatatttcttaggatgtaattttgttaatcatggactggtactaggagataaaatgctgatgattatggtggaaatcta