Sequence
atgc intronic sequence ATGC exonic sequenceACAAAGGGAAGAAAATAGATATCAAAACTGAAGGCAATGATGATGACATGAAGAATCTGCATAACTCAAGTGTCAGCAAAGCTGCTGATATGGCTACTGGgtaattatgactgtttccctttccctctctaattctacattttcgtttttccatcagtctcatttgtctgtattttctcataaacatcaccactatacgt...
Basic information
species | Arabidopsis thaliana |
transcript | AT2G15860.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G15860.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv03s0063g01360.t01 (Vitis vinifera), 5'ss of exon 6
ACAAAGGGAAGAAAATAGATATCAAAACTGAAGGCAATGATGATGACATGAAGAATCTGCATAACTCAAGTGTCAGCAAAGCTGCTGATATGGCTACTGGgtaattatgactgtttccctttccctctctaattctacattttcgtttttccatcagtctcatttgtctgtattttctca-taaacat-caccactatacgt-
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ACAAAGGAAAGAAAGTAGAAGCTGGGGGGGAAGGACATGGTGATGAGATGAAAATTTTACATGATTCAAGTGTCAGCAAGGCTGCAGATATGGCTGCTGGgtaatt-tatttatttatgttttagaattcgatgtt-tttcttcagtttacaattc-tttcatcttctaaaatactctggcttagcatgtgcttgcctctgtt
upper sequence: AT2G15860.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S480_2V6.1 (Physcomitrella patens), 5'ss of exon 6
---ACAAAGGGAAGAAAATAGATATCAAAACTGAAGGCAATGATGATGACATGAAGAATCTGCATAACTCAAGTGTCAGCAAAGCTGCTGATATGGCTACTGGgtaattatgactgtttccctttccct--ctctaattctaca----ttttcgtttttccatc-agtctcatttgtctgtattt-tctcataaacatcaccactatacgt---
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CTGGCAAGGGCAAGAAAGTCGCTG---GTGCTGCTCACAACGGAAGTGAAATTAAGGCTCTTCGTGAGTCAAGTGTCAGCCAAGCTGCAGAGATGGCCACTGGgtaattgcacataatctgatgtcttaagccatgtttttgtaagagttaacggtatgcaatctactcgtgcctgcctccacatatgtcctaagcttggttgcactgttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125306548|gb|EL320633.1|EL320633EST: ATGGCTACTGG GTTCACAAATGCTTTAGCGGGACTACACGTAAATGATATGATCCAGCGAAC
genomic: ATGGCTACTGGgtaattatga ... tgtttatcagGTTCACAAATGCTTTAGCGGGACTACACGTAAATGATATGATCCAGCGAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAAAGGGAAGAAAATAGATATCAAAACTGAAGGCAATGATGATGACATGAAGAATCTGCATAACTCAAGTGTCAGCAAAGCTGCTGATATGGCTACTGGgtaattatgactgtttccctttccctctctaattctacattttcgtttttccatcagtctcatttgtctgtattttctcataaacatcaccactatacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT