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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaaatgcctcaaaagtacacaccataccaaattgattctgatttgttcttagtcaatttttcagtaatctcattgttacatatttctttcag

Basic information

species Arabidopsis thaliana
transcript AT2G03120.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os05g36070.2 (Oryza sativa), 5'ss of exon 8
GCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaaatgcctcaaaagtacacaccataccaaattgattctgatttgttcttagtcaatttttcagtaatctcattgttacatatttctttcag-----
   ||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||| || || ||||||||||| ||||| ||||    | |||  |    || |    | | | |   ||||   | | | | || ||||    |  ||||  |      ||  |||||   || |     
AGCGGACTCTTTTTCTATGATATTTTCTGGGTCTTCTTCACTCCAGTTATGGTCAGTGTTGCCAAGTCATTTGATGCTCCAATAAAGgtaagta----ttccttgatttcactcttgttgcaatagccattcatttctatacctaatcaaaaaatacgtaaggtttccagtagttattttcgtctgtttct

upper sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os02g02530.3 (Oryza sativa), 5'ss of exon 7
GCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaaatgcctcaaaagtacacaccataccaaatt-gattc----tgatttgttcttagt-caatttttcagtaatctcattgttacatatttctttcag--
|| || || |||||||||||||| |||||||||||||| ||||| |||||||| |||||||| ||||| || ||||| || || |||||||||     | | | | ||||       |  |    || ||| |    ||  || |||||  | |||        ||||||  || |  | | |||  | ||   
GCTGGCCTCTTTTTCTATGATATTTTCTGGGTTTTCTTCACTCCTGTTATGGTCAGTGTTGCAAAATCATTTGATGCACCGATAAAGgttagtg----ttctttataagtgattttgactcttgttttgatacaaaatgtctttttctttttacaaaaaaaggctaatctggttatccccttttttctgcatag

upper sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G044348_T04 (Zea mays), 5'ss of exon 8
GCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaaatgcctcaa-aagtacacaccataccaaattgattctgatttgttcttagtcaatttttcag-taatctcattgttacatatttctttcag
|  ||||| ||| | ||||| || |||||||| ||||| |||||||||||||| ||||| || ||||| |||||||||||||| |||||  ||     |  |  |   |       |  |   ||    ||| | | ||  |   |    ||  ||||| | |||||  | |      ||   | |||
GGTGGACTTTTTGTGTATGACATTTTCTGGGTGTTCTTCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggctctttcctactgaacttggtctttgttaataccattttcagttagttccat---atgcttcagctgatctcgctttgcttggttatgtacag

upper sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G150251_T01 (Zea mays), 5'ss of exon 8
GCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaaatgcctcaaaagtacacaccataccaaattgattctgatttgttc--ttagtcaatt---tttcagtaatctcattgttacat---atttctttcag---------------
|  ||||| ||| | ||||| || |||||||| ||||| |||||||||||||| ||||| || ||||| || |||||||| || ||||| || |    | | |    |   |      |   ||    ||| | | |   ||  |||||   ||   |||   | ||||   || | ||    || |   |  |               
GGTGGACTTTTTGTGTATGACATTTTCTGGGTGTTCTTCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTTGATGCTCCTATAAAGgtcagcactctttcatactgaac-ctttttttgttaataccattgtcagtcactcagttagttggttccatttttctcatcttgatgcttcagctgatctggctttgtttggttatgtacag

upper sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA06G08620.3 (Glycine max), 5'ss of exon 8
GCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaaatgcctcaaaagtacacaccata--------ccaaattgattctgatt-tgttcttagtcaatttttcagtaatctcattgttacatatttctttcag--------------------------
|| || |||||| | ||||| || |||||||||||||| |||||||| |||||||| ||||| ||||| || ||||||||||| |||||||       |||     || |  | |                  |  ||| | ||| | |  ||| |    | |    |||    | ||| | | || | || |                            
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATGGTTAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttaagttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtatatttactatgatatcagataagaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag

upper sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 8
GCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaaatgcctcaaaagtacacaccata--------ccaaattgattctgatt-tgttcttagtcaatttttcagtaatctcattgttacatatttctttcag--------------------------
|| || |||||| | ||||| || |||||||||||||| || ||||| ||||| || ||||| ||||| || ||||||||||| |||||||||     |||     || |  | |                  |  ||| | ||| ||| |||| |    | |    |||    || || | | || | || |                            
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagtttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtgtacttactatgatatcagataaaaaaat-gtaataaatctattcctaatattgtcattcaaattattttgcag

upper sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 8
GCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaa---aaatgcctcaaaagtacacaccataccaaattgattctgatttgttcttagtcaatttttcagtaatc--tcattgttacatatttctttcag-------------------------------------
|||||||| ||| | |||||||| |||||||| ||||| |||||||| ||||| |||||||| || |||||||||||||| |||||||| ||| |   |  |      | |    |  ||     |   || || |   ||    ||| |    | |   |||||   |||||       ||||  || |                                      
GCAGGACTTTTTGTTTATGATATTTTCTGGGTCTTCTTCACTCCAGTGATGGTCAGTGTTGCAAAGTCCTTCGATGCTCCTATTAAGgtcagttatccaggtcaactgagatattaatcctggatattctggtttttggttcaatttatttcgctctgttgtaattaatcattaagtttaatttactttattattctaaatgtaataacagttcaattctttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116442939|gb|EG485531.1|EG485531
EST:     TTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAG                         CTCTTATTCCCTACGGGTGATGCTCTAAGACCCTATTCTATGCTTGGTCTT
genomic: TTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaa ... tttctttcagCTCTTATTCCCTACGGGTGATGCTCTAAGACCCTATTCTATGCTTGGTCTT
EST: gi|164120555|gb|ES111003.1|ES111003
EST:     TGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAG                         CTCTTATTCCCTACGGGTGATGCTCTAAGACCCTATTCTATGCTTGGTCTT
genomic: TGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaa ... tttctttcagCTCTTATTCCCTACGGGTGATGCTCTAAGACCCTATTCTATGCTTGGTCTT
EST: gi|164043155|gb|ES135725.1|ES135725
EST:     TTACTCCAGTTATGGTTAGTATTGCCAAATCCTTCGATGCTCCAATTAAG                         CTCTTATTCCCTA-GGGTGATGC
genomic: TTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaa ... tttctttcagCTCTTATTCCCTACGGGTGATGC
EST: gi|124869386|gb|EH953823.1|EH953823
EST:     TTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAG                         CTCTTATTCCCTACGGGTGATGCTCTAAGACCC
genomic: TTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaa ... tttctttcagCTCTTATTCCCTACGGGTGATGCTCTAAGACCC
EST: gi|124918985|gb|EH992774.1|EH992774
EST:     GTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAG                         CTCTTATTCCCTACGGGTGATGCTCTAAGACCCTATTCTATGCTTGGTCTT
genomic: GTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaa ... tttctttcagCTCTTATTCCCTACGGGTGATGCTCTAAGACCCTATTCTATGCTTGGTCTT