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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAAGAATGTCTGTTGCATCTGCTGTGATATTTGGGTCTGTTTTCTGGAGAATGGGGAAGTCTCAGACGTCAATTCAGGACAGAATGGGTTTGCTTCAGgtcttacacattttgcttttgctatatacatctctctttttctgtcttgttgaatatcttttatatatatactaagcaatgataactgtatacttcag

Basic information

species Arabidopsis thaliana
transcript AT2G01320.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01320.4 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os01g03144.1 (Oryza sativa), 5'ss of exon 7
TGCAAGAATGTCTGTTGCATCTGCTGTGATATTTGGGTCTGTTTTCTGGAGAATGGGGAAGTCTCAGACGTCAATTCAGGACAGAATGGGTTTGCTTCAGgtcttacacattttgcttttgctatatacatctctctttttctgtcttgttgaatatcttttatatatatactaagcaatgata--------actgtatacttcag-----------------------------------------------------------------------
 ||||||||||| ||||| || ||  | |||||||| ||||| |||||| ||||||||||  ||||||| || || || ||||| |||||  | ||||||||   | |  ||    ||||  |  |  | |     |   | ||    |||| | ||  || | || |        || | ||         | | |  ||||  |                                                                       
AGCAAGAATGTCCGTTGCTTCAGCAATCATATTTGGATCTGTGTTCTGGCGAATGGGGAAAACTCAGACTTCCATACAAGACAGGATGGGACTTCTTCAGgtagaatatgttggattttttatg-actcgttgagttgaatttgctaggttgcacatgcttcagattttggacttacattcattctcttcctaatattgactttggtacaagctttttcattgtgtctgagcatttttctgattttgatctgtccctttttcaatttatgagttaag

upper sequence: AT2G01320.4 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G26160.1 (Glycine max), 5'ss of exon 7
TGCAAGAATGTCTGTTGCATCTGCTGTGATATTTGGGTCTGTTTTCTGGAGAATGGGGAAGTCTCAGACGTCAATTCAGGACAGAATGGGTTTGCTTCAGgtcttacacattttgcttttgctatatacatctctctttttctgtcttgttgaatatcttttata-tatatactaagcaatgataa-ctgtatacttcag-
 ||||| |||||  |||| || ||  | || |||||||| || || ||||||||||| || |||||||| ||||| || ||||||||||| || |||||||| |   |  || |   ||  ||  || | | | |||  |  || |||| ||   |   |  | |  |  ||  ||    |  ||  ||  ||| |  |  
GGCAAGGATGTCAATTGCGTCGGCAATTATCTTTGGGTCAGTATTTTGGAGAATGGGAAATTCTCAGACTTCAATACAAGACAGAATGGGATTACTTCAGgtttgtgatgttcttgattc-ctgcatgcttgtttctcatattggcttgctgctaacactgcagaacaactatgaaatgtttctattctacatattcaatt

upper sequence: AT2G01320.4 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G41110.1 (Glycine max), 5'ss of exon 7
TGCAAGAATGTCTGTTGCATCTGCTGTGATATTTGGGTCTGTTTTCTGGAGAATGGGGAAGTCTCAGACGTCAATTCAGGACAGAATGGGTTTGCTTCAGgtcttacacattttgcttttgctatatacatctctctttttctgtcttgttg--aatatcttttatatatatactaagcaatgataactgtatacttcag--
 ||||| |||||  ||||||| ||  | || |||||||| || || ||||||||||| || |||||||| ||||| || ||||||||||| || |||||||| |   |  || |   ||  || ||| | ||| |||  |  || |||| ||  || ||   ||  | |   |||| | |||| |  || |   |  ||   
GGCAAGGATGTCAATTGCATCGGCAATTATCTTTGGGTCAGTATTTTGGAGAATGGGAAATTCTCAGACTTCAATACAAGACAGAATGGGATTACTTCAGgtttgtgatgttcttgattc-ctgtatgcttctttctcatattggcttgctgctaacatacattgcagaacaactatgaaatgttg-ctatgctccacattc

upper sequence: AT2G01320.4 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv01s0011g04670.t01 (Vitis vinifera), 5'ss of exon 7
TGCAAGAATGTCTGTTGCATCTGCTGTGATATTTGGGTCTGTTTTCTGGAGAATGGGGAAGTCTCAGACGTCAATTCAGGACAGAATGGGTTTGCTTCAGgtcttacacattttgcttttgctatatacatctctctttttctgtcttgttgaatatcttttatatatatactaagcaatgataactgt-atacttcag-
  |||| |||||  ||||||| ||| | ||||||||||| |||||||||||||||||    |||||||| ||||| |||||||||||||| ||||||||||| | | | ||| |   ||      | |    |  |||    | || || |   | |  |  | ||||| | |||   || |||  |||   | || |  
GTCAAGGATGTCAATTGCATCAGCTATAATATTTGGGTCGGTTTTCTGGAGAATGGGACGATCTCAGACATCAATACAGGACAGAATGGGATTGCTTCAGgtatgatatattatcagttcctctaaaattcttgccttcccttttcatggttgctgtgctgcaaatatacattaaatgataatatttgttgcattttatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072831|gb|DR368588.1|DR368588
EST:     GAATGGGGAAGTCTCAGACGTCAATTCAGGACAGAATGGGTTTGCTTCAG                         GTTGCTGCAATAAACACGGCAATGGCAGCTCTTACAAAGACAGTTGGTGTC
genomic: GAATGGGGAAGTCTCAGACGTCAATTCAGGACAGAATGGGTTTGCTTCAGgtcttacaca ... tatacttcagGTTGCTGCAATAAACACGGCAATGGCAGCTCTTACAAAGACAGTTGGTGTC