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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCCAATGTCGCCGTTATGGCACAAAGTGAACAGCAGAGAGGTCCCCATTAATGCGGTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTCACCgtaagtccccttctctctttctgtgtatctctcttttgtgtgttgggattgctgattgatgagatgaaactggcag

Basic information

species Arabidopsis thaliana
transcript AT2G01170.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01170.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G25660.1 (Glycine max), 5'ss of exon 7
GATGCCAATGTCGCCGTTATGGCACAAAGTGAACAGCAGAGAGGTCCCCATTAATGCGGTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTCACCgtaagtccccttctctctttctgtgtatctctcttt-tgtgtgttgggattgctgattgatgagatgaaactggcag-----------------------
 |||||  ||||  | |||||||||||||| ||||     |||||||| ||  |||| |||||||| || | | ||||||||||||||||||| || || ||| ||       | |       ||||||  | |   | ||| |||  |||    |   ||  |||         |                        
AATGCCGTTGTCATCATTATGGCACAAAGTTAACAAGCAGGAGGTCCCTATATATGCAGTTTGGCTTTCCGTTTTCATATCATTTTGTATGGCACTAACGgtatgtatttaaatttgagatattgtatcggtttaaatatgttttgatatttaaaaaatatctgattttttgtttatttttaaataaaatttttgttttg

upper sequence: AT2G01170.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv01s0011g04210.t01 (Vitis vinifera), 5'ss of exon 7
GATGCCAATGTCGCCGTTATGGCACAAAGTGAACAGCAGAGAGGTCCCCATTAATGCGGTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTCACCgtaag-tccccttctctc-tttctgtgtatctct-cttttgtgtgttgggattgctgattgatgagatgaaactggcag-----------------------
 |||||  | ||||| || ||||| |||||||||      ||||||||||| ||||| |||||||| ||||||   |||||||||||||||||  | || ||| | | |  || | || ||| | | ||  ||| ||| || |  ||  ||  ||  ||   | |  | | |     |                        
AATGCCTTTTTCGCCCTTGTGGCATAAAGTGAACTCACAGGAGGTCCCCATAAATGCAGTTTGGCTTTCTGCTGCTATATCATTTTGTATGGCATTGACGgtatgattcttttatttcatttttttttagttctacttctgcg-attatgacagcc-atcagtaaagtcatatacaaacacccctttccttacaaccatgga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080462|gb|DR376219.1|DR376219
EST:     TTAATGCGGTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTCACC                         TCACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATCGCAACGATT
genomic: TTAATGCGGTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTCACCgtaagtcccc ... aaactggcagTCACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATCGCAACGATT
EST: gi|86082258|gb|DR378017.1|DR378017
EST:     GTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTCACC                         TCACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATCGCAACGATT
genomic: GTTTGGCTCTCTGCTCTCATATCATTTTGTATGGCCCTCACCgtaagtcccc ... aaactggcagTCACTGGGGAGCATAGTGGCGTTCCAAGCAATGGTGTCGATCGCAACGATT