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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCACAGGCATTTTGTTGAGACGCTTGTTGGTAGATAGAAATTTAAGAGGAGTTACTCATGTTATCGTGGATGAAATTCATGAGCGTGGAATGAATGAAGgtatgtatacttttgctatcaagcagctcctcatttttagcttaacttgatttaggtgtcttactatattacttttgtattttag

Basic information

species Arabidopsis thaliana
transcript AT2G01130.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01130.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 1
ACCACAGGCATTTTGTTGAGACGCTTGTTGGTAGATAGAAATTTAAGAGGAGTTACTCATGTTATCGTGGATGAAATTCATGAGCGTGGAATGAATGAAGgtatgtatacttttgctatcaagcagctcctcatt--------tttagcttaac-ttgatttaggtgtcttactat--attacttttgtattttag------
|| || ||  || ||||| |  | ||| |||| ||||||||||| | ||| ||||| |||||||| || |||||||| ||||||||||| |||||||||||| || |  | |     |  ||  |  ||  ||||        | |||||  ||  | |  |||  |  ||  |    | || ||||||||||| |      
ACTACTGGAGTTCTGTTGCGGAGATTGCTGGTGGATAGAAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAGCGTGGCATGAATGAAGgtctgcaatcgtcataaaataaataaatctgcattcaaaaagttatagctagacactcaggtagacgatttcatgctgaatatttttgtatttttgtgctag

upper sequence: AT2G01130.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G25800.1 (Glycine max), 5'ss of exon 10
ACCACAGGCATTTTGTTGAGACGCTTGTTGGTAGATAGAAATTTAAGAGGAGTTACTCATGTTATCGTGGATGAAATTCATGAGCGTGGAATGAATGAAGgtatgtatacttttgctatcaagcagctcctcatttttagcttaacttgatttaggtgtcttactatattacttttgtattttag
|||||||||||||| || ||| | ||  | |  |||||||| |||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||     | |||     |||   |     |   ||||||   |  |  |  ||    | ||  |  |||  ||||||       
ACCACAGGCATTTTATTAAGAAGATTACTAGCTGATAGAAAGTTAAAAGGCGTAACTCATGTTATTGTGGATGAAATTCATGAGCGTGGGATGAATGAAGgtaga---attttgagcttcattgaatcattttcttttagaacatttctaaatattcatattcttgcatt--ttttgtgacag--

upper sequence: AT2G01130.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA09G18490.1 (Glycine max), 5'ss of exon 2
ACCACAGGCATTTTGTTGAGACGCTTGTTGGTAGATAGAAATTTAAGAGGAGTTACTCATGTTATCGTGGATGAAATTCATGAGCGTGGAATGAATGAAGgtatgtatacttttgctatcaagcagctcctcatttttagcttaacttgatttaggtgtcttactatattacttttgtattttag
||||||||||| || || ||| | ||  | |  |||||||| |||| ||| || |||||| |||| || ||||||||||||||||||||||||||||||||||  |    || ||   |  |     || |   | ||      | ||  | |     |  |  |  |||  |||||| |   ||
ACCACAGGCATCTTATTAAGAAGATTACTAGATGATAGAAACTTAATAGGTGTAACTCATATTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtagat----ttctgaacttgattgtgtctttgatatttagaagattttttatgataatgcttttgcatt-tttttgtgtgacag

upper sequence: AT2G01130.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 7
ACCACAGGCATTTTGTTGAGACGCTTGTTGGTAGATAGAAATTTAAGAGGAGTTACTCATGTTATCGTGGATGAAATTCATGAGCGTGGAATGAATGAAGgtatg-tatacttttgctatcaagcagctcctcatttttagcttaacttgatttaggtgtcttactatattacttttgt-attttag
||||||||||| ||||||||| | ||  |||| ||||| ||||| |  || || ||||||||||| || ||||||||||||||||||||||||||||||||||   | |    ||| | |       ||  |  |  ||      |    || | | | |||||| ||  ||| | | | |||  ||
ACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGAATTTGAAGGGCGTAACTCATGTTATTGTTGATGAAATTCATGAGCGTGGAATGAATGAAGgtaaaatgtggacttgatgtt------ctgtttttccttgagaagaggaaatgt-gatttcttaccatgatacatgtttgattccag