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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTTGGATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGATCATACTGCTAAGgtctgtactgagctttcttgcttctttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggttcgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcag

Basic information

species Arabidopsis thaliana
transcript AT1G79990.5
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G124886_T04 (Zea mays), 5'ss of exon 7
TACTTTGGATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGATCATACTGCTAAGgtctgtactgagctttcttgcttctttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggttcgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcag
 ||  | ||||  |||  |||||| || |||||||| || ||||| |||||||| |||  |||||||||||| ||||| ||||||||||| ||||| ||||| |||  | |||       ||   ||| |  |  | || | ||| | ||| ||  | |  |          ||||| |   ||  ||                                                      
CACACTAGATGGCCATTCCAAAGGTGTGAACTGTGTTGATTACTTCACTGGTGGTGATCGACCATACCTAATTACTGGCTCTGATGATCAGACTGCAAAGgtttgtcataagc------actgaattgtac-tcctgtgat-catgtctgtactc-tgtacactgatgacattattgatcaaat-cag------------------------------------------------------

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G141587_T01 (Zea mays), 5'ss of exon 7
TACTTTGGATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGATCATACTGCTAAGgtctgtactgagctttcttgcttctttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggttcgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcag
 ||  | ||||  |||   ||||| || |||||||| || ||||| |||||||| ||   ||||||| |||| ||||| ||||||||||| ||||| ||||| |||  |  | |    ||  |  |    | |  | || | |||   ||  ||      |  |   ||| ||    |  |                                                             
CACACTAGATGGCCATTCGAAAGGTGTGAACTGTGTTGATTACTTCACTGGTGGTGACCGACCATACTTAATTACTGGCTCTGATGATCAGACTGCAAAGgtttgtcatatgatgcactgaattgt----actcctgtggt-catgcatgcactctgtgatgacattattggtcaaatcag-------------------------------------------------------------

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 7
TACTTTGGATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGATCATACTGCTAAGgtctgtactgagctttcttgcttctttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggttcgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcag
|||||||||||| ||||  ||||| || || ||||| || || ||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||||| |          || |   ||        |||| |||    || | | |||||||| | || | ||| |  ||    | ||||||  |  |   |||  |  |    || ||     | || |||               
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttt--------tgttttcattt--------gttgcttg----atctatctgcttgtacgcatttacatatacat-acatatatatatatatgaaaaggaataaca---tggatgaaacttatgaatcag------------

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 7
TACTTTGGATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGATCATACTGCTAAGgtctgtactgagctttcttgcttc-tttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggtt-cgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcag
|||||||||||| ||||  ||||| || || ||||| || || ||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||||| | |  |    ||| ||||||  | |    | |  | ||  || | |    |    |  | | |  |   | ||    || ||  |  || ||     |                                           
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttt-tgttttcatttgttgcttaatctatctgcttgtcgc-gcacacgcacacacacacatgtatgaaaaggaataacatggatgaaacttacgaatcag-------------------------------------------

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 7
TACTTTGGATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGATCATACTGCTAAGgtctgtactgagctttcttgcttctttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggttcgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcag
||| |||||||| ||||  ||||| || || ||||| || |||||||| ||||| || ||||| ||||| || ||||||||||||||||| ||||| ||||| |||  |    ||||| | || ||| |   |  | | |    ||  | || |||  | ||| |  || || || |    ||| || |    |  |    |||      |                               
TACGTTGGATGCCCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAACCTTACCTGATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttct-gtttttttcctcttcatcttcccttta-atttggttgcctatatgtgtatatggataggaattat-tatgccaata-aaacctttgaaacag-------------------------------

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
TACTTTGGATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGATCATACTGCTAAGgtctgtactgagctttcttgcttctttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggttcgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcag
||| |||||||| ||||  ||||| || || ||||| || |||||||| ||||| || || || || ||||| ||||||||||||||||| ||||| ||||| |||  |    |||||   || ||| |   |  | | |    ||  | || ||   | ||| |  || || || |    ||| || |    |  |    |||   |  |                               
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctg--ttttttcctcttcatcttccctcta-atttggtttcctatatttgtatatggataggaattat-tatgccgata-aaacctttgaatcag-------------------------------

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 7
TACTTTGGATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGATCATACTGCTAAGgtctgtactgagctttcttgcttctttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggttcgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcag
|||||||||||  ||  | ||||||||||||||||| || ||||| |||||||| || || |||||| ||||||| |||||||||||||| ||||| ||||| | ||      | |  ||||| ||  | |  |   | | |  ||||||   |    |  ||  |  | |||   | ||  || | |||  |  |||                                            
TACTTTGGATGACCACATGAAAGGGGTAAACTGTGTTGATTACTTCACTGGTGGTGACAAGCCATACTTAATCACGGGTTCTGATGATCAAACTGCCAAGgtgttta------tctgatgcttattgactaaatagcttccatttatgtgcattccatttgattactttctgt---gattaaattttggtg-gaacag--------------------------------------------

upper sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 7
TACTTTGGATGCACATCTCAAAGGGGTAAACTGTGTAGACTACTTTACTGGTGGGGATAAACCATACCTAATCACTGGTTCTGATGATCATACTGCTAAGgtctgtactgagctttcttgcttctttgcaagttgtttgctacatatgtgtgcttgtatgtatctccatttgtattgtttgtatataggttcgtgcagggttttctgtttgtatattgttcataaatttcttctggaagcag
|||  ||||||| ||||  ||||||||||| ||||| || |||||||| || || ||||||||||| |||||||| |||||||||||||||||||||||||||||       | ||  |  || ||| |||| ||| |     || | || | ||  ||  |         | | ||||  |  | |  | |    |  |                                          
TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctgc------cgttgataattattttcaagctgtgtttagtatttatgcggtttgatagaag-------gaaatgttcatggacaaatcctccaaatgcag---------------------------------------