Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGGAAAACCAGAGATAAAGGGTGTTTCATTAACTGAATTGTTCACTCCTGAACAAGTGAGAGAACATATCCGTGGTCTCCGTCAGTGGGTTGGGCAGgtttgtggtttctgtaacttttgaggtttacacaataatgtgattaattactagtattcgctttatatgcggcttgtttgattagttttccctttttaca...

Basic information

species Arabidopsis thaliana
transcript AT1G79000.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79000.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G24290.1 (Glycine max), 5'ss of exon 8
ATCTGGAAAACCAGAGATAAAGGGTGTTTCATTAACTGAATTGTTCACTCCTGAACAAGTGAGAGAACATATCCGTGGTCTCCGTCAGTGGGTTGGGCAGgtttgtggtttctgtaacttttgaggtttacacaataatgtgattaattactagtattcgctttata-tgcggc-ttgtttg-attagttttccctttttaca
|||||| || ||| | ||||| || || |||||||||||||| || ||||| || ||||| || |||||||||  ||||||| | || |||||||| |||||  ||  ||    |    |   |  ||| ||    ||    || | ||| |   ||| | |  ||| | | || || | || | |||||| |  |       
ATCTGGCAAGCCAAAAATAAAAGGAGTCTCATTAACTGAATTATTTACTCCAGAGCAAGTCAGGGAACATATCACTGGTCTCAGGCAATGGGTTGGCCAGgtaagtctttgtattcttgtgccatcttttcattggaaaagtataatttagtt-cattagttaaataatactgcattatctgtactagtttactgtaaacc--