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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTCTCAGCAAAAACCAAGATATTCTTTTCCACTGCAGTAGCCAAATGGGATGCAGAGTTCTATATCAAGGTAGATGATGATGTTCACGTCAATCTCGgtaagaaaacctgcttctcgattcttttgtttgcatcaatctccttcaatgggagcaatgaaaaactttgtctttcag

Basic information

species Arabidopsis thaliana
transcript AT1G77810.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G77810.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os09g27950.1 (Oryza sativa), 5'ss of exon 7
GAACTCTCAGCAAAAACCAAGATATTCTTTTCCACTGCAGTAGCCAAATGGGATGCAGAGTTCTATATCAAGGTAGATGATGATGTTCACGTCAATCTCGgtaagaaaacctgcttctcgattcttttgtttgcatcaatctccttcaatgggagcaatgaaaaacttt--gtctttcag
|| || || ||||| ||||||||||||||||||||||| || ||   ||||||||| || |||||| ||||||| |||||||||||||| ||||| || ||||||    | |  || |  |  ||||    |  || |      |   ||   || ||| ||    |    ||  | |||
GAGCTATCTGCAAAGACCAAGATATTCTTTTCCACTGCTGTGGCATTATGGGATGCTGATTTCTATGTCAAGGTGGATGATGATGTTCATGTCAACCTTGgtaag----ctttattatttagcctttgaccttgatgagagatttgttattc-agtaattaactgatgggagtgatgcag

upper sequence: AT1G77810.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv07s0031g03090.t01 (Vitis vinifera), 5'ss of exon 7
GAACTCTCAGCAAAAACCAAGATATTCTTTTCCACTGCAGTAGCCAAATGGGATGCAGAGTTCTATATCAAGGTAGATGATGATGTTCACGTCAATCTCGgtaagaaaacc-tgcttctcgattcttttgtttgcatcaatctccttcaatgggagcaatgaaaaactttgtctttcag---------------------------------------------------------------------------------------------------
||  |  | ||||| || || |  ||||||||||  ||||| ||  |||||||||| ||||||||| ||||||| |||||||||||||| || ||| | |||  |    || || || |   ||||| | ||    ||  | |  |  |  |  ||| || | | |   |  ||  |                                                                                                     
GAGTTAACTGCAAAGACGAAAACCTTCTTTTCCATGGCAGTTGCTCAATGGGATGCCGAGTTCTATGTCAAGGTTGATGATGATGTTCATGTGAATTTAGgtctgtgctccctgtttattttttcttctcttcctttctttattttcta--gatagcgattagagatggtaactagccaagtttggtgggatgtagagttcaagtactttccagctttactattagcctcacagagtagttactgaactgggactttctatttgttttgaaaatgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116483091|gb|EG525683.1|EG525683
EST:     GGATGCAGAGTTCTATATCAAGGTAGATGATGATGTTCACGTCAATCTCG                         GTATGCTTGCTTCCACACTTGCCCGTCACCGCTCAAAG
genomic: GGATGCAGAGTTCTATATCAAGGTAGATGATGATGTTCACGTCAATCTCGgtaagaaaac ... tgtctttcagGTATGCTTGCTTCCACACTTGCCCGTCACCGCTCAAAG