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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGCTTGACTGTTGGGTTATGAACATTGTTCCCGTTAGCGGATTCAACACCTTGCCAGTTATTTATGACCGTGGACTACAAGGGGCTATGCACGACTGgtacagactgataaccttctgctcttttgcttctaatcccacataactttaacttacacaagatcacatttaaagcttttttcacttacttcctctag

Basic information

species Arabidopsis thaliana
transcript AT1G77260.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G77260.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA13G09520.1 (Glycine max), 5'ss of exon 7
TGGGGCTTGACTGTTGGGTTATGAACATTGTTCCCGTTAGCGGATTCAACACCTTGCCAGTTATTTATGACCGTGGACTACAAGGGGCTATGCACGACTGgtacagactgataaccttctgctcttttgc-ttctaatcccacataactttaacttacacaagat-cacatttaaagcttttttcacttacttcctctag
|   | |||||||||||||||||||  ||||||| || || ||||| || |||||||| ||||| |||||||| || ||   ||| | |||||| || |||||   |    |  | |     ||| |||  || |  |   |  | | |     || || |   |    | ||     | |   | | || |      ||
TCCAGATTGACTGTTGGGTTATGAATGTTGTTCCTGTCAGTGGATTTAATACCTTGCCTGTTATATATGACCGCGGGCTGACAGGAGTTATGCATGATTGgtatgaaaaatttgcttggatatctgttgagttatttttaaatgtgattggtgatttcatactgtgtgaagttgccattgtaaccgcataataatctaag

upper sequence: AT1G77260.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA14G24900.1 (Glycine max), 5'ss of exon 7
TGGGGCTTGACTGTTGGGTTATGAACATTGTTCCCGTTAGCGGATTCAACACCTTGCCAGTTATTTATGACCGTGGACTACAAGGGGCTATGCACGACTGgtacagactgataaccttc-tgctcttttgcttctaatcccacataactttaacttacacaagatcacatttaaagcttttttcacttacttcctctag-
|   | | |||||||||||||||||  ||||||| || || || || || |||||||| ||||| ||||||||||| ||   ||| | |||||| || |||||   |    |  | |   |  |  ||   || |  |   |  | | |     || || |       |  ||     | |  ||      |  ||||  
TCCAGATCGACTGTTGGGTTATGAATGTTGTTCCTGTCAGTGGGTTTAATACCTTGCCTGTTATATATGACCGTGGGCTGATAGGAGTTATGCATGATTGgtatgaaaaattttcttggatatttgttgagttatttttttatgtgattggtggtttcatactgcatgacgtagccaatgtaacagcataataatctaag

upper sequence: AT1G77260.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 7
TGGGGCTTGACTGTTGGGTTATGAACATTGTTCCCGTTAGCGGATTCAACACCTTGCCAGTTATTTATGACCGTGGACTACAAGGGGCTATGCACGACTGgtacagactgataaccttctgctctt--ttgcttctaatcccacataactttaacttacacaagatcacatttaaagcttttttcactt-acttcctctag----
|     |||| || |||||||||||  ||||||| ||||| |||||||||||| |||| || || ||||| ||||||||   ||| | || ||| ||||||||    || |  ||||| | || |   |||||| || |      |  ||||  || |||  |  || | |  | | ||    |||    |  | || ||     
TCCAAGTTGATTGCTGGGTTATGAATGTTGTTCCAGTTAGTGGATTCAACACCCTGCCTGTAATCTATGATCGTGGACTCATAGGAGTTAGGCATGACTGgtatgtgctaagcaccttttcctgtgaattgcttttagtat----ttgctttttctaacatcatttc-cttgaatatctcaaatcatcagagatgctgtaagccc