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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGCAACAATCCTGAAAAGAAAGAGTCATATCTTTGATGATGACAAGGTAATTGTGAAAACTGATTGGTTGGAACAACTGAATCGGACATATGTACAGgtaagatctgcttctcttatgtctctcaaaacgtatatactgtctttagagtggtattttgacattaatgatcaagtttgtccaactctattttgaag

Basic information

species Arabidopsis thaliana
transcript AT1G73980.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73980.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G07610.1 (Glycine max), 5'ss of exon 8
CATTGCAACAATCCTGAAAAGAAAGAGTCATATCTTTGATGATGACAAGGTAATTGTGAAAACTGATTGGTTGGAACAACTGAATCGGACATATGTACAGgtaagatc-tgcttctcttatgtctctcaaaacgtatatactgtctttagagtggt-attttgacattaatgatc--aagtttgtccaactctattttgaag--
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AATTGCAGCTATTCTGAAAAGAAGCAGCCATGTCTTTCATGATGATAAAGTGACCATAAAAACTGATTGGCTAGAACAACTTAATCGCACATATGTTCAGgtataacagcatatcgttcatatcattc----ccttaacatttttttacacctgttgattctgtgataagttgttttaatctacccctactgtttgttgtccaa