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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCTGGGCTGCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAGgtaggaaactcctacactgatgcataattctgcaacaattttagatttgttttctattttctgatttcttttttttgtgtcaattctctatcaatag

Basic information

species Arabidopsis thaliana
transcript AT1G73020.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73020.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G20980.2 (Glycine max), 5'ss of exon 7
TGCAGTTTCTTGCTCTCCCAAGTTTCTTTGTGGGCACAATACTCTGGGCTGCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAGgtagg---aaactcctacactgatgcataattc--tgcaacaattttag--atttgttttcta----ttttctgatttcttttttttgtgtcaattctctatcaatag-----
|| | ||  | |  || || | ||||||  |       ||||| ||||||    |||||  |||||||||||||||||||||| ||||  | |||||||||||     | |||  |  |||  |       ||  |||||  | || |   ||||| || ||     | |||    |||   | ||| | ||  |  | | |   |       
TGAAATTAGTCGTGCTTCCTATTTTCTTCATCATGGTGATACTTTGGGCTATAATGTTTTCTCAGTTCTGGAAACGTAAAAATTCGGCACTTTTAGCCAGgtaatgttatacttttttacttcttttgggatcagtgcaatcacttgacgcatttgcttgctgagattcttccctcttcacatctttttctctctcgtgttttggtgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116423940|gb|EG466532.1|EG466532
EST:     GCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAG                         ATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
genomic: GCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAGgtaggaaact ... ctatcaatagATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
EST: gi|116435865|gb|EG478457.1|EG478457
EST:     GCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAG                         ATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
genomic: GCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAGgtaggaaact ... ctatcaatagATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
EST: gi|116436399|gb|EG478991.1|EG478991
EST:     TTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAG                         ATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
genomic: TTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAGgtaggaaact ... ctatcaatagATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
EST: gi|116423949|gb|EG466541.1|EG466541
EST:     GTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAG                         ATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
genomic: GTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAGgtaggaaact ... ctatcaatagATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
EST: gi|116423860|gb|EG466452.1|EG466452
EST:     GCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAG                         ATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
genomic: GCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAGgtaggaaact ... ctatcaatagATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
EST: gi|116436480|gb|EG479072.1|EG479072
EST:     ATGCGGCCTTGTTAGCCAG                         CTGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
genomic: ATGCGGCCTTGTTAGCCAGgtaggaaact ... ctatcaatagATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
EST: gi|116436474|gb|EG479066.1|EG479066
EST:     ATGCGGCCTTGTTAGCCAG                         CTGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
genomic: ATGCGGCCTTGTTAGCCAGgtaggaaact ... ctatcaatagATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
EST: gi|116436397|gb|EG478989.1|EG478989
EST:     GCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAG                         ATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
genomic: GCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAGgtaggaaact ... ctatcaatagATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
EST: gi|116423947|gb|EG466539.1|EG466539
EST:     GCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAG                         ATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
genomic: GCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAGgtaggaaact ... ctatcaatagATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
EST: gi|116423849|gb|EG466441.1|EG466441
EST:     GCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAG                         ATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
genomic: GCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAGgtaggaaact ... ctatcaatagATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
EST: gi|116436486|gb|EG479078.1|EG479078
EST:     ATGCGGCCTTGGTAGCCAG                         ATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
genomic: ATGCGGCCTTGTTAGCCAGgtaggaaact ... ctatcaatagATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
EST: gi|116435864|gb|EG478456.1|EG478456
EST:     GCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAG                         ATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
genomic: GCCTTGTTTCTTCAGTTCTGGAAACGTAAAAATGCGGCCTTGTTAGCCAGgtaggaaact ... ctatcaatagATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
EST: gi|116457871|gb|EG500463.1|EG500463
EST:     AATGCGGCCTTGTTAGCCAG                         ATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
genomic: AATGCGGCCTTGTTAGCCAGgtaggaaact ... ctatcaatagATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
EST: gi|116423941|gb|EG466533.1|EG466533
EST:     GAAACGTAAAAATGCGGCCTTGTTAGCCAG                         ATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG
genomic: GAAACGTAAAAATGCGGCCTTGTTAGCCAGgtaggaaact ... ctatcaatagATGGCAGATAAATTGTTTAGTTGGCCCCAGCCAAGGATATAGATTTCTCGG