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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATACTGAGAACTGGGTGAACTCGCCAGGACAAGCAGAAGACAACTCATGGCAGGCTTTTGTTTTTGCTCCAAAGGGAAACTGGTATACAGCTAAGgcaagtctcgtacttctacaaagcaactagtgttaaaaggggttttgctgtaacttgttaactcaagtgtgacatctttcttcttcag

Basic information

species Arabidopsis thaliana
transcript AT1G72420.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085870|gb|DR381629.1|DR381629
EST:     CATGGCAGGCTTTTGTTTTTGCTCCAAAGGGAAACTGGTATACAGCTAAG                         GTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCA
genomic: CATGGCAGGCTTTTGTTTTTGCTCCAAAGGGAAACTGGTATACAGCTAAGgcaagtctcg ... tcttcttcagGTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCA
EST: gi|116420282|gb|EG462874.1|EG462874
EST:     CATGGCAGGCTTTTGTTTTTGCTCCAAAGGGAAACTGGTATACAGCTAAG                         GTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCA
genomic: CATGGCAGGCTTTTGTTTTTGCTCCAAAGGGAAACTGGTATACAGCTAAGgcaagtctcg ... tcttcttcagGTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCA
EST: gi|152038463|gb|AV823677.2|AV823677
EST:     CATGGCAGGCTTTTGTTTTTGCTCCAAAGGGAAACTGGTATACAGCTAAG                         GTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCA
genomic: CATGGCAGGCTTTTGTTTTTGCTCCAAAGGGAAACTGGTATACAGCTAAGgcaagtctcg ... tcttcttcagGTTCCTCTTACTCGCTACTTACCAACATGGAAAGGAAACGTGATAGATGCA