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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAACCAACAAAAGACTAGAGAATGCGAAGAAGCATTGAATTCTCTCAGTGAGATTCAAAATGAACTAATGCGCAAGTCGATGCATGTTGGTTCTTTGGgtatgtacatctctctccttcatatttcgccttccttgttatcgttaaagttgacatatatgtacttgttcataaatagcgtttgctgtcgag

Basic information

species Arabidopsis thaliana
transcript AT1G72250.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G72250.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA15G40350.1 (Glycine max), 5'ss of exon 6
GAGAACCAACAAAAGACTAGAGAATGCGAAGAAGCATTGAATTCTCTCAGTGAGATTCAAAATGAACTAATGCGCAAGTCGATGCATGTTGGTTCTTTGGgtatgtacatctctctccttcatatttcgccttccttgttatcgttaaagttgacatatatgtacttgttcat------aaatagcgtttgctgtcgag---
||||| ||||| |||| |||||||||| ||||||| | ||| ||  | |  ||| |||||||||| |||||||||||||| |||||||| || |||||||||||| | | | || ||     |||||    || |    |||  | ||| |  |||| |  |   || || ||      || ||   ||| | |    |   
GAGAATCAACAGAAGAGTAGAGAATGCCAAGAAGCTTGGAACTCCTTGAAAGAGCTTCAAAATGAGCTAATGCGCAAGTCCATGCATGTAGGATCTTTGGgtatgcataaccctttct---gtatttattattac--actattataaaactaaacatttgaggttttttttatctgatcaactaatattttcggctctgcag

upper sequence: AT1G72250.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G18590.1 (Glycine max), 5'ss of exon 6
GAGAACCAACAAAAGACTAGAGAATGCGAAGAAGCATTGAATTCTCTCAGTGAGATTCAAAATGAACTAATGCGCAAGTCGATGCATGTTGGTTCTTTGGgtatgtacatctctctccttcatatttcgccttccttgttatcgttaa--agttgacatat-atgtacttgttca-taaatagcgtttgctgtcgag
||||| ||||| |||| |||||||||| ||||||| | ||| ||  | |  ||  |||||||||| |||||||||||||| ||||| ||||| |||||||||||| | |  ||| |   |  |  ||    | |  |  |||   |||  | ||||  | |  | |   || ||| |  |||   || |||||  ||
GAGAATCAACAGAAGAGTAGAGAATGCCAAGAAGCTTGGAACTCCTTGAAAGAACTTCAAAATGAGCTAATGCGCAAGTCCATGCACGTTGGATCTTTGGgtatgcataattctttatgtggttattattatactattatataactaatcatttgaggttttgtttctctgatcaattgatatttttggctgtgcag