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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTTGATACATTCAATACAGCTATAGTATCTCCTATATACTACGTGATGTTCACATCTCTAACTATTTTGGCTAGTGTCATCATGTTTAAGgtatcctctgctcccacaaaatgtatctatggttgtatgagggtgttgtttcagactttcagtacatgattcaaatcgttgtggttttgaacag

Basic information

species Arabidopsis thaliana
transcript AT1G71900.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71900.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G104147_T03 (Zea mays), 5'ss of exon 7
GCTCTTGATACATTCAATACAGCTATAGTATCTCCTATATACTACGTGATGTTCACATCTCTAACTATTTTGGCTAGTGTCATCATGTTTAAGgtatcct------ctgctcccaca---aaatgt----atctatggttgtatgagggtgttgtttcagactttcagtacatgattcaaatcgttgtggttttgaacag
|| || |||||||| ||||||||  |||| || || ||||| ||||||||||| ||||| ||||| ||| | |||||||| || ||||| |||||| ||        | ||  ||     || | |    || ||| |||   |||  |  || | |   |       ||    |||||  |  |||  ||||       
GCACTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAGgtaacccattttattactttcatgagcaactattatcatttattgttaagtgaatgctttttgttgaaaaaa-gctaagaaattcacttgcttggtgtttg------

upper sequence: AT1G71900.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G104147_T04 (Zea mays), 5'ss of exon 1
-------GCTCTTGATACATTCAATACAGCTATAGTATCTCCTATATACTACGTGATGTTCACATCTCTAACTATTTTGGCTAGTGTCATCATGTTTAAGgtatcct------ctgctcccacaa------aatgt-atctatggttgtatgagggtgttgtttcagactttcagtacatgattcaaatcgttgtggttttgaacag
       || || |||||||| ||||||||  |||| || || ||||| ||||||||||| ||||| ||||| ||| | |||||||| || ||||| |||||| ||        | ||  ||  |      | | | || ||| |||   |||  |  || | |   |       ||    |||||  |  |||  ||||       
ATTGCAGGCACTGGATACATTTAATACAGCAGTAGTCTCACCAATATATTACGTGATGTTTACATCACTAACAATTATAGCTAGTGTGATAATGTTCAAGgtaacccattttattactttcatgagcaactattatcatttattgttaagtgaatgctttttgttgaaaaaa-gctaagaaattcacttgcttggtgtttg------