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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGAGATAACATGCAAAAGTCCGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGATTTTGATTCCCGTGTATTACGGTATAAGgtagtcactttactgacttatcttgtgtcttgataaaaaaaaagatttgatgctcaaatgatatgtctagcaacaactaagcaaaccatgttttatcatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G71410.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 7
GAAAGAGATAACATGCAAAAGTCCGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGATTTTGATTCCCGTGTATTACGGTATAAGgtagtcactttactg--acttatcttgtgtcttgataaaaaaaaagat---ttgatgctcaaatgatatgtctagcaacaactaagcaaaccatgttttatcatgcag
|| |||||||| ||||| ||| | ||||| || || |||||||||||||||||||| |||||||||||||| ||  | || ||||| |||    |  |||||  |   ||| | ||||||  |   |  || | |      |||     |   | |||  |||| ||  |    |        || ||       
GAGAGAGATAATATGCAGAAGACAGAGTTTTTGAAGGCATTATCAGATATGTGGAAGGATTTTGATTCCCGAGTTCTTCGATATAAAgtatgttcagtactgcaatccatcct-tgtcttcttccgaccaatgctacccccatgtgtccactctctgtg-agcatcattttgttatgtaccacttcatt------

upper sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G37070.1 (Glycine max), 5'ss of exon 7
GAAAGAGATAACATGCAAAAGTCCGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGATTTTGATTCCCGTGTATTACGGTATAAGgtagtcactttactgacttatcttgtgtcttgataaaaaaaaagatttgatgctcaaatgatatgtctag-caacaactaagcaaaccatgttttatcatgcag
||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| || |||||||||  | || | |||  |  |  ||    || ||        |  | || |  |||| |  ||||||  | |     |  |||| ||    |||   ||  |  
GAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCGCGCGTATTGCGATATAAGgtatgctctatgctgtttggttatgaaattt-atgtgttttcacttctgctagtcaattt-tatgtcaggtctttctcccagcatacataatttgtacactc--

upper sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA09G00470.1 (Glycine max), 5'ss of exon 7
GAAAGAGATAACATGCAAAAGTCCGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGATTTTGATTCCCGTGTATTACGGTATAAGgtagtcactttactgacttatcttgtgtcttgataaaaaaaaagatttgatgctcaa----atgatatgtctagcaacaactaagcaaaccatgttttatcatgcag
||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| || || ||||||  | || | |||  |     ||    || ||        |  | || |  | ||     ||  | ||||  |  | |  |  || |   ||| || ||      
GAAAGAGATAACATGCAGAAGTCAGAGTTCTTAAAAGCATTGTCAGATATGTGGAAAGATTTTGATTCACGTGTATTGCGATACAAGgtatgctctatgctgtttggctatgaaattt-atgtgttttcacttctgctagtgaattttgtgtcacgtctctctcccagcatacataatttgtattctc------

upper sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv18s0089g00030.t01 (Vitis vinifera), 5'ss of exon 7
GAAAGAGATAACATGCAAAAGTCCGAGTTCTTAAAAGCATTATCAGATATGTGGAAAGATTTTGATTCCCGTGTATTACGGTATAAGgt---agtcactttactgacttatcttgt--gtcttgataaaaaaaaagatttgatgctcaaatgatatgtctagcaacaactaagcaaaccatgttttatcatgcag
||||| ||||||||||| ||||| |||||  ||||||||||||| |||||||||||||||||||| || ||||| || || ||||||||   |  ||| |   || || ||        ||||  ||   | || |  | | |   ||||  |    |  |  | ||      || |    |||  ||    |||
GAAAGGGATAACATGCAGAAGTCTGAGTTTCTAAAAGCATTATCGGATATGTGGAAAGATTTTGACTCTCGTGTTTTGCGTTATAAGgtttgaaccacgt-gttgtctcattgcaatgatctttgtatctataatggatggtt--ccaaacaa---attcatgatcag--ggccataatgggttcaattgatcag