Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   		33  
 5'  3'   		34  
 5'  3'   		35  
 5'  3'   		36  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGCGCAGAGAATAGTCCATGCCTCTGATCCTCTGCAGTCTATGCAAGAAATTAATCAAAACTTTCCTAGTGTAGTTTCTTCATTATCTCGCATGAAGgtatgtcattgtttttttgatgttgtgtttacctgctggttgaattgtttccttgtggttttagatgtgtctggtttatcgtgcag

Basic information

species Arabidopsis thaliana
transcript AT1G71220.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71220.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G370162_T02 (Zea mays), 5'ss of exon 7
AACAGCGCAGAGAATAGTCCATGCCTCTGATCCTCTGCAGTCTATGCAAGAAATTAATCAAAACTTTCCTAGTGTAGTTTCTTCATTATCTCGCATGAAGgta-tgtcattgtttttttgatgttgtgtttacct--gctggttgaattgtttccttgtggttt---tagatgtgtctggtttatcgtgcag-------------------------
 ||||| ||| |||| || || || || || ||| | ||||| ||||| ||||| |||||||| || || ||| ||||||||||| |||| || ||||||||| ||| |    ||| |   | |   | || |||  | |  |  | ||  || |   |   ||   |  |  | |   ||  ||   || |                         
GACAGCACAGCGAATCGTTCAAGCATCAGACCCTTTACAGTCAATGCAGGAAATCAATCAAAATTTCCCAAGTATAGTTTCTTCACTATCACGAATGAAGgtaatgttacatctttctcactttaaagcttgcctttgtttctctactttatttccaatacattaattgaaattatgaagtggattcggctgttacaacaatatcatgcttgtacag

upper sequence: AT1G71220.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G13400.1 (Glycine max), 5'ss of exon 8
AACAGCGCAGAGAATAGTCCATGCCTCTGATCCTCTGCAGTCTATGCAAGAAATTAATCAAAACTTTCCTAGTGTAGTTTCTTCATTATCTCGCATGAAGgta--tgtcattgtt-----tttttgatgttgtgtttacctgc-tggttgaattgtttccttgtggttttagatgtgtctggtttatcgtgcag-------------
||| |  |||||||| |||| ||| ||||||||||||||||| ||||| ||||| |||||||| || ||||| ||||||||||| || |||||||||||||||  | |  |||||     |  || |||||  |    |     |  ||  |   ||||||||       |  | | |     |||| |  | |             
AACTGTACAGAGAATTGTCCGTGCTTCTGATCCTCTGCAGTCAATGCAGGAAATAAATCAAAATTTCCCTAGCGTAGTTTCTTCCTTGTCTCGCATGAAGgtacatattcttgttaattgtcatttatgttaggcactctcatatttttagacattttccttggaaaaaaatgtctattattcttatggaactgcttctcatgacag

upper sequence: AT1G71220.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G20020.1 (Glycine max), 5'ss of exon 7
AACAGCGCAGAGAATAGTCCATGCCTCTGATCCTCTGCAGTCTATGCAAGAAATTAATCAAAACTTTCCTAGTGTAGTTTCTTCATTATCTCGCATGAAGgtatgt--cattgtttttttgatgttgtgtttacct--gctggttgaat------tgtttccttgtggttttagatgtgtc-tggtttatcgtgcag---
||| |  ||||||||||||| ||||||||||||||| ||||| ||||| || || |||||||| || ||||   |||||||||| || |||||||||||||||  |  | |||||  ||| ||    || | || |  |   ||| | |      |  ||  |||| ||| ||   |      |   |   |||||    
AACTGTACAGAGAATAGTCCGTGCCTCTGATCCTCTACAGTCAATGCATGATATCAATCAAAATTTCCCTAACATAGTTTCTTCTTTGTCTCGCATGAAGgtaaataactttgttactttcattggatgctaacataagacagtttactcccaagtaattgtttgttgttctaatggaactgcgacgtgctgtgcaacag

upper sequence: AT1G71220.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G30230.1 (Glycine max), 5'ss of exon 8
AACAGCGCAGAGAATAGTCCATGCCTCTGATCCTCTGCAGTCTATGCAAGAAATTAATCAAAACTTTCCTAGTGTAGTTTCTTCATTATCTCGCATGAAGgta-tgtcattgt-ttttttgatgtt-gtgtt---tacctgc-tggttgaattgtttccttgtggttttagatgtgtctggtttatcgtgcag-------------
||| |  |||||||| ||||  || || |||||||||||||| ||||| ||||||||||||||||| |||||  |||||||||| || |||||||  |||||| ||| ||  | ||  ||| | ||  ||||    ||   | |  ||  |   ||||||||       || | | |     |||  |  | |             
AACTGTACAGAGAATTGTCCGAGCTTCGGATCCTCTGCAGTCAATGCAGGAAATTAATCAAAACTTCCCTAGCATAGTTTCTTCCTTGTCTCGCACAAAGgtaatgtaatcttgttaattgttatttatgttaggcactcacatttttagacattttccttggaaaaaaaggtctattattcttacggaactgcttctcatgacag

upper sequence: AT1G71220.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv12s0034g02230.t01 (Vitis vinifera), 5'ss of exon 8
AACAGCGCAGAGAATAGTCCATGCCTCTGATCCTCTGCAGTCTATGCAAGAAATTAATCAAAACTTTCCTAGTGTAGTTTCTTCATTATCTCGCATGAAGgtatgtcattgtttttttgatgttgtgtttacctgctggttgaattgtttccttgtggttttagatgtgtctggtttatcgtgcag--------------------------------------------------------
||| || ||||| ||||| ||||||||||||||||||||||| |||||||| || || ||||| || ||||||||||||||||| ||||||||||||||||||  ||||   |  |  |||||||    | |    || |  ||     |   ||| |    | |  ||    |||| |      |                                                        
AACTGCACAGAGGATAGTTCATGCCTCTGATCCTCTGCAGTCAATGCAAGAGATCAACCAAAATTTCCCTAGTGTAGTTTCTTCCTTATCTCGCATGAAGgtaaatcatc-ctactaagatgttgcaggtcctaaatgatctaaaaaggtgtctgttg----aaacatggaaagtttgttccaaggatatctaatgcttttagacatcctgattaaatggtatggtgctgaacattttgcag