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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTGTCCTGTTTCACTATGACGGCCGGGTAACTGAGTGGGATGAGTTTGAATGGTCAAAGACTGCTATACACATTAGCGTACGAAAGCAGACAAAATGgtaccaaacgctctttattctttatggtagaaaatagtttggtgtgtttatgactactgactcccttggcacctggaaatatattag

Basic information

species Arabidopsis thaliana
transcript AT1G67850.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67850.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA18G01710.1 (Glycine max), 5'ss of exon 7
CTATTGTCCTGTTTCACTATGACGGCCGGGTAACTGAGTGGGATGAGTTTGAATGGTCAAAGACTGCTATACACATTAGCGTACGAAAGCAGACAAAATGgt-----accaaacgctct-ttattctttatggtagaaaatagt--ttggtgtgtttatgactactgactcccttggc--acctgg----aaatatattag-------------------------------
||||  | || ||||| ||||| |||||    ||||| ||||||||||||||||||||||||   ||||| ||  | || || |  || ||||| |||||||      | || || |   ||||| |||| | ||  ||||  |  |||  || |||   | || |      |   ||  ||||      || ||| |||                                
CTATCCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTCAGTGTTCACAAACAGACCAAATGgttaggagctaagcggttaattatttttta-gataataaattatcgttgtagtttttgcaagtattagtgttcaatgcttacctaatttcaattatgttattatattgacaattttggtttttccctcttag

upper sequence: AT1G67850.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA11G37770.1 (Glycine max), 5'ss of exon 7
CTATTGTCCTGTTTCACTATGACGGCCGGGTAACTGAGTGGGATGAGTTTGAATGGTCAAAGACTGCTATACACATTAGCGTACGAAAGCAGACAAAATGgta------ccaaacgctctttattctttatggtagaaaatagt-ttggtgtgtttatgactactgactcccttggc--acctgg----aaatatattag-------------------------------
||||| | || ||||| ||||| |||||    ||||| ||||||||||||||||||||||||   ||||| ||  | || || |  || ||||| ||||||||        | | | || ||||| ||||  | | ||| |    |||  || |||   | || |          ||  ||||      || ||| | |                                
CTATTCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTGAGTGTTCACAAACAGACCAAATGgtaaggagctaagatgttcattattttttagaggataaattttcattgtagtttttgcaattaatagtgtttagtgcttacctaatttcaattatgtcaatacattgacaattttagtttttccctcttag