Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACTGCTCAATCTGGTCCTTTATCATTCAAGGGGAGCCCATATTGGATGGCACCTGAGgtcagtatgctgctacaacctgtctgtttcaatgttgacaggcgttatgctgatgctttattatcttgcttggatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G63700.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63700.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA11G02520.1 (Glycine max), 5'ss of exon 10
ATTACTGCTCAATCTGGTCCTTTATCATTCAAGGGGAGCCCATATTGGATGGCACCTGAGgtcagtatg-ctgctacaacctgtctgtttcaatgttgacaggcgttatgctgatgctttattatcttgcttggatttcag-
|| | ||  |||||  |||| ||||| ||||| || || || || ||||||||||||||||||||||||  | ||       || | ||  |||     |    | | |  |  || ||   |  ||   |||  | ||   
ATAAGTGGGCAATCCTGTCCATTATCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGgtcagtatgatttctttgttgagttttttgtaattgatgcttttgatgtaatattgtttgtgtcactgttttgattgtctag

upper sequence: AT1G63700.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G42960.1 (Glycine max), 5'ss of exon 7
ATTACTGCTCAATCTGGTCCTTTATCATTCAAGGGGAGCCCATATTGGATGGCACCTGAGgtcagtatg----ctgctacaacctgt-ctgtttcaatgttgacaggcgttatgctg-atgctttattatcttgcttggat--ttcag
|| | ||  |||||  |||| ||||| ||||| || || || || ||||||||||||||||||||||||    ||     ||| ||   | |||   | ||||      | ||     ||  ||| |     ||||| |||  |  ||
ATAAGTGGGCAATCCTGTCCATTATCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGgtcagtatgatttctttgttaacttgcatttttttgttattgatgcttttgatataatattgtttgtgtcactgctttgattgtctag

upper sequence: AT1G63700.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 9
ATTACTGCTCAATCTGGTCCTTTATCATTCAAGGGGAGCCCATATTGGATGGCACCTGAGgtcagtatgctgctacaacctgt-ctgtt--tcaatgtt---gacaggcgtta-tgctgatgctttattatcttgcttggatttcag
|||||||  |||||| |||| ||||| || ||||||||||| || ||||||||||||||||||||  || |  |      ||| |||||  ||| ||||   ||||  | ||  |  | |    || | ||     ||    |||||
ATTACTGGACAATCTTGTCCGTTATCCTTAAAGGGGAGCCCTTACTGGATGGCACCTGAGgtcagcctggttttcatttttgtactgttggtcactgttcttgacaatcctttctagtaacatatt-tgattgaatttatcattcag