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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAGAGGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAgtaagcacaaacagttatcaaaatctcccattcagttcatctatttctaaccccctgatttttcggattcactttttgcatcccaatcttgatggtctcttcag

Basic information

species Arabidopsis thaliana
transcript AT1G62305.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G62305.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv10s0116g00980.t01 (Vitis vinifera), 5'ss of exon 8
AAAA---AGAGGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAgtaagcacaaacagttatcaaaatctcccattcagttcatctatttctaaccccctg-atttttcggattcactttttgcatcccaatcttgatggtctcttcag----------------------------------------------------------------------------------
|||    ||| ||  |||||||||||||||||||||||||| ||||| ||  ||||  |||||||||       | ||       |     |  |||| || |    | |     |     ||  |   || || ||  ||     ||  || ||   | ||                                                                                     
AAACTTCAGAAGCAGCACAACTGTATCCCTGATGAACACTATGTGCAGACATTACTTGCAgtaagcattgg-gttcatgtttgcttttttatttgttc-tccaccgatgattatttatgacttatgagctccctcttctcactaagattatggtgtcgttttttattccaaaactagcaaaactaagagattgtttattatcatattacgtttttttttaattctttactctgtgttttcctcttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116385380|gb|EG427972.1|EG427972
EST:     GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACA                         GTGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
genomic: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAgtaagcacaa ... gtctcttcagATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
EST: gi|116385363|gb|EG427955.1|EG427955
EST:     GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACA                         GTGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
genomic: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAgtaagcacaa ... gtctcttcagATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
EST: gi|116385379|gb|EG427971.1|EG427971
EST:     GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACA                         GTGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
genomic: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAgtaagcacaa ... gtctcttcagATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
EST: gi|116385383|gb|EG427975.1|EG427975
EST:     GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACA                         ATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
genomic: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAgtaagcacaa ... gtctcttcagATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
EST: gi|116385604|gb|EG428196.1|EG428196
EST:     GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACA                         GTGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA
genomic: GGCGACACAACTGTATCCCTGATGAACACTACGTGCAAACTCTACTAACAgtaagcacaa ... gtctcttcagATGCGTGGCTTGGAAAATGAAATGGAACGGAGAACAGTGACATACACCACA