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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCTCTTGACTTGCTACCACCAAGCCCAATGGTTCTCGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgttatatgatgacttctgttaattgttctttagaagaaattgttctaggtttatggaatcaacttgttaagaagaaagctacaaaaatccgagaca...

Basic information

species Arabidopsis thaliana
transcript AT1G57720.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G57720.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os02g12800.1 (Oryza sativa), 5'ss of exon 7
AATCCTCTTGACTTGCTACCACCAAGCCCAATGGTTCTCGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgtta-tatgatgacttctgttaattgttctttagaagaaattgttctaggtttatggaatcaacttgttaagaagaaagctacaaaaatccgagaca
||||||||||| ||||| || ||||||  |||| | || ||||| ||||||||| | ||||| ||||| ||| | ||||||||||||||||||||||| |||| |||  | |  ||   |||  || |   |    ||     |       |  ||||| | ||    |||||   ||| |    |  | ||     ||  
AATCCTCTTGATTTGCTCCCTCCAAGCAAAATGATCCTTGATGAGTGGAAGAGGTTATACTCAAACACAAAAACAAACTTCCGTGAGGTTGCTATCAAGGgtaagtttcttttttggaatctactagtcagtaaaaagtttccagatagacaaatttattgcattgctttgttgcaaaggatatgaatacaaattaggat-

upper sequence: AT1G57720.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os06g37440.1 (Oryza sativa), 5'ss of exon 7
AATCCTCTTGACTTGCTACCACCAAGCCCAATGGTTCTCGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgttatatgatgacttctgttaattgttctttagaagaaattgttctaggtttatggaatcaacttgt-taagaagaaagctacaaaaatccgagaca-----
|||||||||||  | || |||||||||   ||| |||| ||||| ||||||||||| ||||| ||||| ||| |||||||||||||  |||| || ||||||||  | | |  |   ||     ||||| ||| |   | | |||     | || | |   | ||| |||| |  |  |   | ||  |    | ||         
AATCCTCTTGATCTACTGCCACCAAGCAAGATGATTCTTGATGAGTGGAAGAGGCTATACTCAAACACAAAAACCAACTTCCGTGAAATTGCCATTAAAGgtattatttctattttgtttcag-aattgctctatttgatatatt-----aagtatctcctagcaagttgtgtggggggcttgttatcattggctgattttgtcta

upper sequence: AT1G57720.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os02g12794.3 (Oryza sativa), 5'ss of exon 6
AATCCTCTTGACTTGCTACCACCAAGCCCAATGGTTCTCGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgttatatgatgacttctgttaattg---------ttctttagaagaaattgttctaggtttatggaatcaacttgttaagaagaaagctacaaaaatccgagaca
|| |||||||| ||||| || ||||||   ||| | || ||||| ||||||||| | ||||| ||||| ||| | || |||||||||||||||||||| |||| |||   |   |   |||  || |           |||     |  ||| | |  |   |||  |||||| | | || |  || || | | | | |          
AACCCTCTTGATTTGCTCCCTCCAAGCAAGATGATCCTTGATGAGTGGAAGAGGTTATACTCAAACACAAAAACAAATTTCCGTGAGGTTGCTATCAAGGgtaagtttcttttgggaatctagtagtcactaaaaggtttccacgtagaaaagtatagtttctttcgggaatctagtagtcactaaaaaggtttccacag---------

upper sequence: AT1G57720.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G059580_T03 (Zea mays), 5'ss of exon 5
AATCCTCTTGACTTGCTACCACCAAGCCCAATGGTTCTCGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgttatatgatgacttctgttaattgttctttagaagaaattgttctaggtttatggaat----caacttgttaagaagaaagctacaaaaatccgagaca
||||||||||||||||| |||||||||   ||||| || ||||||||||||||||| ||||| ||||| ||  |||||||||| |||||||| ||||||||||||||   || |   ||||   |||| || | |   ||    || | |         | |     |||  | | ||    | ||  |   ||||  | ||  
AATCCTCTTGACTTGCTGCCACCAAGCAAGATGGTCCTTGATGACTGGAAGAGGCTATACTCAAACACAAAGACCAACTTCCGGGAGGTTGCCATCAAAGgtatgtt---tgcttctttctaacaatttttatgtgcgagtggctggtgttaaaaggcagtactttacaatctatcaatcttacaggaagctaaatttgggag-

upper sequence: AT1G57720.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G122871_T02 (Zea mays), 5'ss of exon 6
AATCCTCTTGACTTGCTACCACCAAGCCCAATGGTTCTCGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgttatatgatgacttctgttaattgttctttagaagaaattgttctaggtttatggaatcaacttgttaagaagaaagctacaaaaatccgagaca------
||||||||||||||||| |||||||||   ||||| || ||||||||||||||||| ||||| ||||| ||  | |||||||| |||||||| |||||||||||   || |      |||  | |  || ||  || |     || |||     | |     |  |  ||  |||  |   | |    ||||| |           
AATCCTCTTGACTTGCTGCCACCAAGCAAGATGGTCCTTGATGACTGGAAGAGGCTATACTCAAACACAAAGACTAACTTCCGGGAGGTTGCCATCAAAGgtat--catctccatgtttcaatgatatgatcaatacatttgcttcttcc---ctaacaattttgaactgc-aagtggctggtttttgaaatctgtactttgcaat

upper sequence: AT1G57720.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G134582_T01 (Zea mays), 5'ss of exon 7
AATCCTCTTGACTTGCTACCACCAAGCCCAATGGTTCTCGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgtt-atatgatgacttctgttaattgttctttagaagaaattgttctaggtttatggaatcaacttgttaagaagaaagctaca-aaaatccgagaca--
|| |||||||| ||||| || || |||   ||| |||| ||||| ||||||||||| ||||| ||||| ||| |||||||||||||||||||||| |||||||||||    || ||     |     |||   |||   |  |||  || | | |  || |  | ||    | | ||  |  ||||||  | ||   |   |  
AACCCTCTTGATTTGCTTCCTCCTAGCAAGATGATTCTTGATGATTGGAAGAGGCTGTACTCTAACACGAAAACCAACTTCCGTGAGGTTGCTATTAAAGgtatgtttgcttgttgttaaattcctgttgaatttttttaacaatgattatggttacatagttttaa----taatgattatggctacatgagatattactaact

upper sequence: AT1G57720.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G029559_T02 (Zea mays), 5'ss of exon 7
AATCCTCTTGACTTGCTACCACCAAGCCCAATGGTTCTCGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgttat--atgatgacttctgttaattgttctttagaagaaattgttctaggtttatggaatcaacttgttaagaagaaagctacaaaaatccgagaca
||||| ||||| ||||| || || |||    || |||| || || ||||||||||| || || ||||| ||| |||||||||||||||||||||| ||||||||||| |  |  ||||||   ||||  |  | || | ||  | || ||    ||||    ||| |   || | | |  | |  |  |  |||  || |  
AATCCCCTTGATTTGCTTCCTCCGAGCAAGTTGATTCTTGACGATTGGAAGAGGCTGTATTCTAACACGAAAACCAACTTCCGTGAGGTTGCTATTAAAGgtatgtttttaacaatgactatggttacatagttttaacaatgatttttttatagttttaacaataattatgcttacataagatat-tactaattagaaag-

upper sequence: AT1G57720.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ26267 (Selaginella moellendorffii), 5'ss of exon 5
AATCCTCTTGACTTGCTACCACCAAGCCCAATGGTTCTCGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAA---CTTCCGTGAGGTTGCTATCAAAGgtatgttatatgatgacttctgttaattgttctttagaagaaattgttctaggtttatggaatcaacttgttaagaagaaagctacaaaaatccgagaca
   ||||| |||||||| ||||| || || |||||| | || |||||||||||||| ||||| ||||||||  ||||   ||||   || |||||| |||||||||    |  || ||  |||  || || | |     ||| |   || |   | | |      |   ||||                              
---CCTCTCGACTTGCTGCCACCGAGTCCCATGGTTTTGGACGACTGGAAGAGGCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgta---caagtggtg-tttccattgatcgctt----gaaaatgctgattctgatctc-----ttcccttgcag---------------------------

upper sequence: AT1G57720.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ14564 (Selaginella moellendorffii), 5'ss of exon 6
AATCCTCTTGACTTGCTACCACCAAGCCCAATGGTTCTCGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAA---CTTCCGTGAGGTTGCTATCAAAGgtatgttatatgatgacttctgttaattgttctttagaagaaattgttctaggtttatggaatcaacttgttaagaagaaagctacaaaaatccgagaca
   ||||| |||||||| ||||| || || |||||| | || |||||||||||||| ||||| ||||||||  ||||   ||||   || |||||| |||||||||    |  || ||  |||  || || | |     ||| |   || | | | |      ||||   |||                              
---CCTCTCGACTTGCTGCCACCGAGTCCCATGGTTTTGGACGACTGGAAGAGGCTCTACTCCAACACCAAGGCCAAGGACTTCGCAGAAGTTGCTCTCAAAGgta---caagtggtg-tttccattgatcgctt----gaaaatgctgattttgatccc--aaatc--tttgcag---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116439635|gb|EG482227.1|EG482227
EST:     GAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAG                         GATTCTGGGACATGTATGACCCGGAGAGGTACTCACTATGGTTCTGTGACT
genomic: GAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgttata ... ttcattgcagGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
EST: gi|125316649|gb|EL330734.1|EL330734
EST:     CCAACTTCCGTGAGGTTGCTATCAAAG                         GATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
genomic: CCAACTTCCGTGAGGTTGCTATCAAAGgtatgttata ... ttcattgcagGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
EST: gi|125254974|gb|EL269059.1|EL269059
EST:     CTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAG                         GATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
genomic: CTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgttata ... ttcattgcagGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
EST: gi|124817969|gb|EH902835.1|EH902835
EST:     CTTCCGTGAGGTTGCTATCAAAG                         GATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
genomic: CTTCCGTGAGGTTGCTATCAAAGgtatgttata ... ttcattgcagGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
EST: gi|116439637|gb|EG482229.1|EG482229
EST:     GAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAG                         GATTCTGGGACATGTATGACCCGGAGAGGTACTCACTATGGTTCTGTGACT
genomic: GAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgttata ... ttcattgcagGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
EST: gi|125149875|gb|EL182820.1|EL182820
EST:     AGGCTTTACTCGAACACCAAATCCAACT-CCGTGAGGTTAGCTATCAAAG                         GATTCTGGGACATGTA
genomic: AGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTT-GCTATCAAAGgtatgttata ... ttcattgcagGATTCTGGGACATGTA
EST: gi|124818825|gb|EH903691.1|EH903691
EST:     GAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAG                         GATTCTGGGACATGTATGACCCGGAGGGGTTACTCACTATGGT
genomic: GAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgttata ... ttcattgcagGATTCTGGGACATGTATGACCCGGAGGGGT-ACTCACTATGGT
EST: gi|125009067|gb|EL081336.1|EL081336
EST:     ACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAG                         GATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTT
genomic: ACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgttata ... ttcattgcagGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTT
EST: gi|124717041|gb|EH808443.1|EH808443
EST:     AACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAG                         GATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
genomic: AACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgttata ... ttcattgcagGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
EST: gi|163974517|gb|ES074627.1|ES074627
EST:     TCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAG                         GATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
genomic: TCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgttata ... ttcattgcagGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
EST: gi|125185763|gb|EL200717.1|EL200717
EST:     TCCGTGAGGTTGCTATCAAAG                         GATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
genomic: TCCGTGAGGTTGCTATCAAAGgtatgttata ... ttcattgcagGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
EST: gi|47830537|gb|CK120221.1|CK120221
EST:     GAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAG                         GATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT
genomic: GAGGCTTTACTCGAACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGgtatgttata ... ttcattgcagGATTCTGGGACATGTATGACCCGGAGGGGTACTCACTATGGTTCTGTGACT