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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTTTGCGCATGTTAAGTTTTGGATATGATTATCACTGGAGCCAACTGGATTCTCATTTTGATCAGGAGgtgatatatagtcttcctatctaacactctctgtcctttctgataaatcttttaccggtctctcagtagtattggaataggtgtagccatctcttatttttctatttcattattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G57600.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 8
TTGTTTTGCGCATGTTAAGTTTTGGATATGATTATCACTGGAGCCAACTGGATTCTCATTTTGATCAGGAGgtgatatatagtcttcctatctaacactctctgtcctttctga-ta-aatcttttac----cggtctctcagtagtattggaataggtgtagccatctcttatttttctatttcattattgcag
|||||||||||||| |||| |||||||  |||| |||||||||  | |  |||||||| |||||| ||||||| || | |  | || ||   |||   |   |||   || ||| || ||  || |||    | || ||||  |    ||   || | || |   ||  ||                        
TTGTTTTGCGCATGATAAGCTTTGGATTCGATTTTCACTGGAGTAATCAAGATTCTCACTTTGATAAGGAGgt-atgttttttatttctga-taatggtacttgtttgttttgaatataagattctactctacagtttctctctcagtttaatatggttgcaaggatgactgt----------------------

upper sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 1
TTGTTTTGCGCATGTTAAGTTTTGGATATGATTATCACTGGAGCCAACTGGATTCTCATTTTGATCAGGAGgtgatatatagtcttcc-tatctaacactctctgtcctttctgataaatcttttaccggtctctcagtagtattggaataggtgtagccatctcttatttttctatttcattattgcag
   ||||||||||| |||| |||||||||||||| ||||||   || |  | |||||||||||||||| ||||   ||  | ||| |  |  ||  ||  |||||    |  |||      | | |  | |  ||   |||  |  |   |  |  | | |   ||  |||||   ||            
--ATTTTGCGCATGATAAGCTTTGGATATGATTACCACTGGGCTCATCAAGGTTCTCATTTTGATCAGAAGgt---attcattctgctgtgactttcatgctctgaatgtcttga-gtgcatctgatggattgct---tagattctggccaaattaaacaacagctggtttttgagtt------------