1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAGgtaataagaatatcttatcactgaaacatttttgtctttcataatggtatatgtttgaaactaaacacatgattgttttggtag
species | Arabidopsis thaliana |
transcript | AT1G56340.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAG GTGAAATCTGGTTCCTTGTTCGEST: gi|86064682|gb|DR360439.1|DR360439
genomic: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAGgtaataagaa ... gttttggtagGTGAAATCTGGTTCCTTGTTCG
EST: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAG GTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAGAGEST: gi|116465699|gb|EG508291.1|EG508291
genomic: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAGgtaataagaa ... gttttggtagGTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAGAG
EST: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAG GTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAGAGEST: gi|163988219|gb|ES092534.1|ES092534
genomic: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAGgtaataagaa ... gttttggtagGTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAGAG
EST: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAG GTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAEST: gi|116465718|gb|EG508310.1|EG508310
genomic: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAGgtaataagaa ... gttttggtagGTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCA
EST: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAG GTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAGAGEST: gi|116465735|gb|EG508327.1|EG508327
genomic: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAGgtaataagaa ... gttttggtagGTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAGAG
EST: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAG GTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAGAGEST: gi|125192254|gb|EL207208.1|EL207208
genomic: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAGgtaataagaa ... gttttggtagGTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAGAG
EST: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAG GTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAGEST: gi|116482410|gb|EG525002.1|EG525002
genomic: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAGgtaataagaa ... gttttggtagGTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAG
EST: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAG GTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAGAG
genomic: AACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAGgtaataagaa ... gttttggtagGTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAGgtaataagaatatcttatcactgaaacatttttgtctttcataatggtatatgtttgaaactaaacacatgattgttttggtag
- - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - TTGGAG