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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGAGAGGTGATGACTCCTCTTGTTGATGTAGTTGCAATAGATGGCAGCGGCAGCCTGGTTGACTTCCATAACTTTTGGGTGACCCATCAATACTCAAGgtctataaattttcacagcctttttagtgaccctttttcgtccattaggattattcgttatgctcaaatgttttcttcacag

Basic information

species Arabidopsis thaliana
transcript AT1G55930.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55930.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 7
TTCGAGAGGTGATGACTCCTCTTGTTGATGTAGTTGCAATAGATGGCAGCGGCAGCCTGGTTGACTTCCATAACTTTTGGGTGACCCATCAATACTCAAGgt---ctataaattttcacagcc----tttttagtgaccctttttcgtccattaggattattcgttatgctcaaatgttttcttcacag
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TCAGAGAGGTTATGACACCTCTTGTTGATGTTGTTGCAATTGATGCAAGTTCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAGgtattttgaagatttccaggtttcaaatttacagtgattttacttt-tccaatgtgctaattga--atcatgacacgtttcctag----