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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTATTGATTTGATTGTGCAACACATCCATACGAAGCTCGGTCAACATGATCTCTGTAAAATTTATCCAAATCTTTATGTTATTCAATCAACTTTTCAGgttttacttattccccttttctcgtctactcaacaacaatcattttcttgtttagtcacccaaaagactgatcctttggccgctgcttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G55810.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 8
TGCTATTGATTTGATTGTGCAACACATCCATACGAAGCTCGGTCAACATGATCTCTGTAAAATTTATCCAAATCTTTATGTTATTCAATCAACTTTTCAGgtttt-----acttattccccttttc--tcgtctactcaacaacaatcattttcttgtttagtcacccaaa--agactgatcctttggccgctgct-tgcag
 || |||||||||||||| || || ||||  || ||||| ||||| ||||| || |||||||| ||||| ||| | ||||| ||||| ||||||||||||||        | ||||   |||||||  |  |||     | |||    |  || |  ||| ||||    |   | ||        | |  ||| || |||||
GGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGgtaccctgcaatttatgggccttttcaattatctcacttagaactccaaacttttgattttgtcattacagttaaaccatcttgatagttgctactatgcag

upper sequence: AT1G55810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 6
TGCTATTGATTTGATTGTGCAACACATCCATACGAAGCTCGGTCAACATGATCTCTGTAAAATTTATCCAAATCTTTATGTTATTCAATCAACTTTTCAGgttttacttattccccttttctcgtctactcaacaacaatc--attttcttgtttagtc----acccaaaagactgatcctttggccgctgcttgcag-------------------------------
 ||||||||||||||||| ||||| || |  |||||||| ||||| |||||  | |||||||| ||||| ||| | ||||| ||||| || |||||||||||    |||  |     ||| | ||||  | | |||  |||  || |||    ||| ||    ||    ||    |||  |||      |  |   ||                               
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACTTGTGTAAAATATATCCTAATTTATATGTCATTCAGTCTACTTTTCAGgtacccctttcttgttatttatggtct--ttatcaatcatcccatcttccccgttaatctggaacttccaaattcgatttttttttttttattaaaagttgaatcatcacgataattgcttcgatgcag

upper sequence: AT1G55810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 8
TGCTATTGATTTGATTGTGCAACACATCCATACGAAGCTCGGTCAACATGATCTCTGTAAAATTTATCCAAATCTTTATGTTATTCAATCAACTTTTCAGgtttt-----acttattccccttttc--tcgtctactcaacaacaatcattttcttgtttagtcacccaaa--agactgatcctttggccgctgct-tgcag-
 || |||||||||||||| || || || |  || ||||| ||||| ||||| || |||||||| ||||| ||| | ||||| ||||| ||||||||||||||        | ||||   |||||||  |  |||     | |||    |  || |  ||| ||||   ||   |  |        |    ||| || ||||| 
-GCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGGtaccctgcaatttatggaccttttcaattatctcactgagaactccaaacttttgattttgtcataaaagttaagccatcttgataattgctactatgcaga

upper sequence: AT1G55810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA02G47270.1 (Glycine max), 5'ss of exon 8
TGCTATTGATTTGATTGTGCAACACATCCATACGAAGCTCGGTCAACATGATCTCTGTAAAATTTATCCAAATCTTTATGTTATTCAATCAACTTTTCAGgttttacttattccccttttctcgtctac-tcaacaa--caatcattttcttgtttagtc--acccaaaagactgatcctttggccgctgcttgcag-------------------------------
 ||||||||||||||||| ||||| || |  |||||||| ||||| |||||  | |||||||| ||||  ||  | ||||| ||||| || |||||||||||    |||  |     ||| | | ||   ||||  |  | ||| ||  |  ||| ||    | |    | | | |   |||      |  |   ||                               
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACATGTGTAAAATATATCGTAACTTATATGTCATTCAGTCTACTTTTCAGgtacccctttcttgttatttattgactttatcaatgatcccatc-ttcccccgttcagctggaacttccaaattcaattttttttatttattaaaagttgaatcatcacgataattgcttcgatgtag

upper sequence: AT1G55810.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 8
TGCTATTGATTTGATTGTGCAACACATCCATACGAAGCTCGGTCAACATGATCTCTGTAAAATTTATCCAAATCTTTATGTTATTCAATCAACTTTTCAGgttt--tacttattccccttttctcgt-ctactcaacaacaat-cattttcttgttta-------gtcacccaaaagactgatcctttggccgctgct--tgcag---------------------------------------------------------------------------------------------
 || |||||||||||||||||||| || | ||| || || || ||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| |   |  | ||||  ||| ||  |  || | |       |   | | | ||| |        ||      |||  |  |   |   | |  ||    || |                                                                                              
AGCCATTGATTTGATTGTGCAACATATTCGTACAAAACTTGGACAACATGATCTTTGTAAAATATATCCTAATCTTTATGTCATTCAATCAACTTTTCAGgtatatcagctcttcctatttgctattattatttactgtgggtgtgtgtgcctgtgtgtgtgcgtgtgtttttaaattccaaatttcatgtcattgtaaatgtaaggtcacatgatcttgtggattcgatattcagttttatttgcctattgaagttccaaatttcatatgattgaagctttatttgatttgatccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124922810|gb|EL001064.1|EL001064
EST:     ATCTCTGTAAAATTTATCCAAATCTTTATGTTATTCAATCAACTTTTCAG                         ATACGTGGTATGCACACTCTAATCCGCGAC
genomic: ATCTCTGTAAAATTTATCCAAATCTTTATGTTATTCAATCAACTTTTCAGgttttactta ... ctgcttgcagATACGTGGTATGCACACTCTAATCCGCGAC