Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTCAAGATTCAGCAGTTGCATAATGCTCGTTGCCTATGCTGCTTACCTCTTTTTCCAGTTAAAGAGCCAGCCGAGCTCTTATACCCCTCTCACCGAGgtttgttgtctttgaccttcggttgactttcgttttttcttacaaaaagcctggaaacgatagactaagataattataaatagaacaattgtttcaacat...

Basic information

species Arabidopsis thaliana
transcript AT1G55730.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55730.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G44920.1 (Glycine max), 5'ss of exon 5
TCTCTCAAGATTCAGCAGTTGCATAATGCTCGTTGCCTATGCTGCTTACCTCTTTTTCCAGTTAAAGAGCCAGCCGAGCTCTTATACCCCTCTCACCGAGgtttgttgtctttgaccttcggttgactttcgttttttcttacaaaaagcctggaaacgatagactaagataattata-aatagaac--aattgtttcaacat
 || |||||||||||||| ||||||||||| || ||||| | ||| | ||| ||||||||||| || || ||    ||    |||  |||| | | ||||||  || |||||  | |    |||  | ||   ||||       |      ||    ||  | |    |     |||   |||  |   | ||| || |||  
ACTTTCAAGATTCAGCAGCTGCATAATGCTTGTGGCCTACGTTGCATGCCTATTTTTCCAGTTTAAAAGTCAAAGAAGTCTCTATGTCCCTGTGAACGAGgtcggtagtcttgtatca--agtttccattttgttttctcagtcattcttttgtgtgcgggatatgtggtatgctatgtgatatgattgatttgcttgaact-

upper sequence: AT1G55730.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G44910.1 (Glycine max), 5'ss of exon 7
TCTCTCAAGATTCAGCAGTTGCATAATGCTCGTTGCCTATGCTGCTTACCTCTTTTTCCAGTTAAAGAGCCAGCCGAGCTCTTATACCCCTCTCACCGAGgtttgttgtctttgaccttcggttgactttcgttttttcttacaaaaagcctggaaacgatagactaagata-attataaatagaacaattgtttcaacat-
 || |||||||||||||| ||||| ||||| || || |||| ||| ||||| ||||| |||||||| || ||    |     ||   | || | | ||||||| |  |||||  |  |   |||  ||||   |   || | |          | |    | |  |   ||    ||| | |       || | | | ||  
ACTTTCAAGATTCAGCAGCTGCATTATGCTTGTGGCTTATGTTGCATACCTATTTTTTCAGTTAAAAAGTCAAAGAAATCTCTACGTCTCTGTGAACGAGgttggcagtctt--atatcaagtttcctttttctcagtcattcttttgtttgtggatatgtggtatgccatgtgatattattgattttcttatgtaatcaca

upper sequence: AT1G55730.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G21910.1 (Glycine max), 5'ss of exon 4
TCTCTCAAGATTCAGCAGTTGCATAATGCTCGTTGCCTATGCTGCTTACCTCTTTTTCCAGTTAAAGAGCCAGCCGAGCTCTTATACCCCTCTCACCGAGgtttgttgtctttgaccttcggttgactttcgttttttcttacaaaaagcctggaaacgatagactaagataattataaatagaacaattg-tttcaacat----
 || |||||||||||||| ||||| ||||| || || |||| ||| ||||| ||||| |||||||| || ||    |     ||   | || | | ||||||| |  |||||  |  | | |||  ||||  || |||| | ||   |  ||        | ||        ||   |  |   |  |||| |||    ||    
ACTTTCAAGATTCAGCAGCTGCATTATGCTTGTGGCTTATGTTGCATACCTATTTTTTCAGTTAAAAAGTCAAAGAAATCTCTACGTCTCTGTGAACGAGgttggcagtctt--atatccagtttccttt--ttgtttcct-cagtcattcttttgtttgtggatatgtggtatgccatgtgatattattgattttcttatgtaa