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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTGgtaaataacgactttgacactgatttaagctttgagaacctagtagttcctgtaagaggttaaaattactataagaagcggaattatcgatatatactta...

Basic information

species Arabidopsis thaliana
transcript AT1G54100.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G54100.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G130440_T02 (Zea mays), 5'ss of exon 7
GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTGgtaaataacgactttgacactgatttaagctttgagaacctagtagttcctgta-agaggttaaaattactataagaagcggaattatcgatatatactta----
||||||||||||| |||||| | ||||||||||| ||||| |||||||||  |  |  |      |||||  ||  ||  ||  | |  || | | |||| |||  ||      | | | | |    || || | | |   |  |||    
GTTGGAATGCTTGCATTGCTTTGGTCTGTGGAAATTGTGTCGTCTGgtaagaatggtttacttttctgat--aaaattccagtgc-tgata-tacatgtatagaaattgttgccattctgaaatattgagtt-tggctccctgattattca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116420799|gb|EG463391.1|EG463391
EST:     GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTG                         GAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGT
genomic: GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTGgtaaataacg ... gattccacagGAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGT
EST: gi|116420807|gb|EG463399.1|EG463399
EST:     GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTG                         GAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGT
genomic: GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTGgtaaataacg ... gattccacagGAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGT
EST: gi|116486592|gb|EG529184.1|EG529184
EST:     GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTG                         GAAAGGTGCTCCAACTACGCCGTTAATAACTATCGCAATGACCAAGCTAGT
genomic: GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTGgtaaataacg ... gattccacagGAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGT
EST: gi|301501447|gb|HO206987.1|HO206987
EST:     GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTG                         GAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGT
genomic: GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTGgtaaataacg ... gattccacagGAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGT
EST: gi|116486594|gb|EG529186.1|EG529186
EST:     GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTG                         GAAAGGTGCTCCAACTACGCCGTTAATAACTATCGCAATGACCAAGCTAGT
genomic: GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTGgtaaataacg ... gattccacagGAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGT
EST: gi|301501173|gb|HO206713.1|HO206713
EST:     GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTG                         GAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGT
genomic: GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTGgtaaataacg ... gattccacagGAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGT
EST: gi|116420806|gb|EG463398.1|EG463398
EST:     GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTG                         GAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGT
genomic: GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTGgtaaataacg ... gattccacagGAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGT
EST: gi|301502366|gb|HO207906.1|HO207906
EST:     GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTG                         GAAAGGTGCTCCAACTACACCG
genomic: GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTGgtaaataacg ... gattccacagGAAAGGTGCTCCAACTACACCG
EST: gi|116486590|gb|EG529182.1|EG529182
EST:     GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTG                         GAAAGGTGCTCCAACTACGCCGTTAATAACTATCGCAATGACCAAGCTAGT
genomic: GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTGgtaaataacg ... gattccacagGAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGT
EST: gi|116486591|gb|EG529183.1|EG529183
EST:     GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTG                         GAAAGGTGCTCCAACTACGCCGTTAATAACTATCGCAATGACCAAGCTAGT
genomic: GTTGGAATGCTTGTATTGCTCTTGTCTGTGGAAACTGTGTAGTCTGgtaaataacg ... gattccacagGAAAGGTGCTCCAACTACACCGTTAATAACTATCGCAATGACCAAGCTAGT