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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACCGGCTCTGATGATCACACTGCTAAGgtatgcctcctgttcaatggtcttttagttgatacatttctactggacattatgtgctttcaggttatttactagttgaatttcgtgaatcag

Basic information

species Arabidopsis thaliana
transcript AT1G52360.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 7
TACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACCGGCTCTGATGATCACACTGCTAAGgtatgcctcctgt--tcaatggtctttt-agttgat---acatttctactggacattatgtgctttcaggttatttactagttgaatttcgtgaatcag
 ||||| |||| ||||   ||||| || |||||||| ||||| || || |||||||||   || || |||||||| |||||||||||||| || || ||||||||||  |||   | |||  |||| | |||  ||   |||||  |||  |||| |  ||    ||||                              
CACATTAGATGGCCATTCAAAAGGTGTCAATTGTGTTGATTACTTTACTGGTGGTGATCGCCCATACTTAATTACAGGCTCTGATGATCAGACCGCGAAGgtatgccatctgcagtgaattatcttgtgagtatattggacattgttacgagacacttcgttgaatcag------------------------------

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 8
TACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACCGGCTCTGATGATCACACTGCTAAGgtatgcctcctgttcaatggtcttttagttgatacatttctactggacattatgtgctttcaggttatttactagttgaatttcgtgaatcag
 ||||||||||  |||   ||||| || |||||||| ||||| ||||| ||||||||   ||| ||| ||||||| ||||||||||| || ||||| |||||||| |   ||||||        || |   |||      |  |||||||||||     |  | | | ||   | ||                
CACATTGGATGGTCATTCAAAAGGTGTCAATTGTGTTGATTACTTCACTGGTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgaca--tgttca--------tttgcacatatgagcattttggacattatgactgattggttaacttg--aattag--------------

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 7
TACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACCGGCTCTGATGATCACACTGCTAAGgtat-gcctcc---tgttcaatggtcttttagttgatacatttctac-tggacat-------tatgtgctttcaggttatttac-tagttgaatttcgtgaatcag
||| |||||||| |||||||||||||| |||||||| |||||||| || |||||||| || || ||| |||| || || ||||||||||||||||||||||| | |  | |   ||||   || ||| |  | |  |||   | ||| |  ||||       ||| |   |  |    | | || | | ||||  |  ||||||||
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttgatctatctgcttgtacgcatttacatatacatacatatatatatatatgaaaaggaataacatggatgaaacttatgaatcag

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 7
TACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACCGGCTCTGATGATCACACTGCTAAGgtatgcctcctgttcaatg----gtct-tttagttgatacatttctactggacattatgtgctttcaggttatttac-tagttgaatttcgtgaatcag
||| |||||||| |||||||||||||| |||||||| |||||||| || |||||||| || || ||| |||| || || ||||||||||||||||||||||| |   |    ||   ||     ||| | |  |||   |       |        |  ||  |  |    | | || | | ||||  |   |||||||
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttttgttttcatttgttgcttaatctatctgcttgtcgcgcacacgcacacacacacatgtatgaaaaggaataacatggatgaaacttacgaatcag

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
TACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACCGGCTCTGATGATCACACTGCTAAGgtatgcctcctgttcaatggtcttttagttgatacatttct---actggacattatgtgctttca----------ggttatttactagttgaatttcgtgaatcag
|||||||||||| ||||| |||||||| |||||||| ||||| || || |||||||| ||||| ||| |||| || || ||||||||||||||||| ||||| ||  | || ||   || | |||    |    | |  ||   | | |   |  | |  ||  |            |||||     | | ||     ||||||||
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctgttttttcctcttcatcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcag

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 7
TACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACCGGCTCTGATGATCACACTGCTAAGgtatgcctcctgttcaatggtcttttagttgatacatttctactggacattatgtgctttcaggttatttactagttgaatttcgtgaatcag-----------------
||| |||||||||||||| |||||||| |||||||| ||||| || || |||||||| || || ||  | || || || ||||||||||||||||| ||||| ||  | || ||   || | ||||  |   | ||| |   ||  |  ||   ||| |  | ||  | ||    | | | ||  |    ||                  
TACGTTGGATGCCCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAACCTTACCTGATAACTGGTTCTGATGATCACACTGCCAAGgtttgttttctattttctgtttttttcctc--ttcatcttccctttaatttggttgcctatatgt-gtatatggataggaattattatgccaataaaacctttgaaacag

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 7
TACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACCGGCTCTGATGATCACACTGCTAAGgtatgcctcctgttcaatggtcttttagttgatacatttctactggacattatgtgctttcaggttatttactagttgaatttcgtgaatcag
||| ||||||| |||   |||||| ||||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || ||||||||||| ||||| ||||| |      | |   ||| |  || | |  |||  || |   |        |    ||      | | |   | |  | ||| ||| | |||
TACTTTGGATGACCACATGAAAGGGGTAAACTGTGTTGATTACTTCACTGGTGGTGACAAGCCATACTTAATCACGGGTTCTGATGATCAAACTGCCAAGgtgt-----ttatctgatgcttattgactaaatagcttccatttatgtgcattccatttgattactttctgtgattaaattttggtggaacag

upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 7
TACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACCGGCTCTGATGATCACACTGCTAAGgtatgcctcctgttcaatggtcttttagttgatacatttctactggacattatgtgctttcaggttatttac-tagttgaatttcgtgaat-cag
|||| ||||||||||||||||||| ||||||||||| ||||| || || || |||||||| || ||| |||| || || ||||||||||| ||||||||||| ||||     |  |||  | ||  || ||     |||    |  |     | || |   |||  || | | | |   |||      ||| |||
TACACTGGATGCCCATCAGAAAGGGGTAAATTGTGTTGATTACTTTACAGGCGGTGATAAACCATATCTAATCACGGGTTCTGATGATCATACTGCTAAGgtctgccgttgat--aattattttcaagctg---tgtttagtatttatgcggtttgatagaaggaaatgttcatggacaaatcctccaaatgcag